View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1031_low_15 (Length: 240)

Name: NF1031_low_15
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1031_low_15
NF1031_low_15
[»] chr7 (27 HSPs)
chr7 (51-217)||(32853684-32853850)
chr7 (1-50)||(7389389-7389438)
chr7 (2-50)||(8080435-8080483)
chr7 (1-51)||(35137532-35137582)
chr7 (1-50)||(3434562-3434611)
chr7 (1-50)||(11044188-11044237)
chr7 (1-50)||(36361964-36362013)
chr7 (1-50)||(40957707-40957756)
chr7 (1-51)||(19329841-19329891)
chr7 (1-51)||(31735883-31735933)
chr7 (1-51)||(38267039-38267089)
chr7 (1-50)||(4999565-4999614)
chr7 (1-50)||(36362026-36362075)
chr7 (13-50)||(38837217-38837254)
chr7 (1-47)||(3783998-3784044)
chr7 (13-50)||(10343626-10343663)
chr7 (1-50)||(19436238-19436287)
chr7 (1-50)||(22343361-22343410)
chr7 (1-50)||(36208173-36208222)
chr7 (3-51)||(21234400-21234448)
chr7 (2-50)||(41915741-41915789)
chr7 (1-51)||(8238211-8238262)
chr7 (4-50)||(38044197-38044243)
chr7 (13-51)||(39255986-39256024)
chr7 (13-50)||(18207180-18207217)
chr7 (1-50)||(35468906-35468955)
chr7 (1-50)||(46374853-46374902)
[»] chr8 (25 HSPs)
chr8 (1-51)||(20074985-20075035)
chr8 (1-51)||(504172-504222)
chr8 (1-51)||(15197332-15197382)
chr8 (1-51)||(34012347-34012397)
chr8 (1-50)||(1179991-1180040)
chr8 (1-50)||(12831047-12831096)
chr8 (1-50)||(44507138-44507187)
chr8 (4-51)||(40423997-40424044)
chr8 (1-51)||(23122648-23122698)
chr8 (1-50)||(10284682-10284731)
chr8 (1-50)||(14547922-14547971)
chr8 (2-51)||(15048233-15048282)
chr8 (1-50)||(37038479-37038528)
chr8 (2-50)||(4854915-4854963)
chr8 (1-49)||(5957831-5957879)
chr8 (13-49)||(9122196-9122232)
chr8 (4-50)||(30479528-30479574)
chr8 (1-50)||(16383377-16383426)
chr8 (1-50)||(34307216-34307265)
chr8 (1-45)||(10621138-10621182)
chr8 (4-50)||(14055646-14055692)
chr8 (1-51)||(43414632-43414682)
chr8 (1-50)||(24307629-24307678)
chr8 (1-50)||(24307844-24307893)
chr8 (14-50)||(32032725-32032761)
[»] chr4 (22 HSPs)
chr4 (1-51)||(3481653-3481703)
chr4 (1-51)||(6034043-6034093)
chr4 (1-51)||(11511513-11511563)
chr4 (1-50)||(480498-480547)
chr4 (1-50)||(48183100-48183149)
chr4 (1-50)||(50052479-50052528)
chr4 (4-50)||(29239886-29239932)
chr4 (1-51)||(31910191-31910241)
chr4 (4-50)||(41236347-41236393)
chr4 (1-51)||(50526222-50526272)
chr4 (1-51)||(54473584-54473634)
chr4 (6-50)||(29234301-29234345)
chr4 (14-50)||(42044431-42044467)
chr4 (1-51)||(40574778-40574828)
chr4 (1-50)||(24995158-24995207)
chr4 (1-50)||(55475191-55475240)
chr4 (3-50)||(19670769-19670816)
chr4 (1-50)||(23608235-23608284)
chr4 (1-50)||(32766958-32767007)
chr4 (13-50)||(55079777-55079814)
chr4 (2-50)||(8343215-8343263)
chr4 (14-50)||(47986208-47986244)
[»] chr3 (25 HSPs)
chr3 (1-51)||(53982010-53982060)
chr3 (1-50)||(11095404-11095453)
chr3 (1-50)||(49607414-49607463)
chr3 (1-51)||(33644199-33644249)
chr3 (1-50)||(54868946-54868995)
chr3 (1-45)||(52629305-52629349)
chr3 (1-50)||(8076393-8076442)
chr3 (1-50)||(14623890-14623939)
chr3 (1-50)||(27714942-27714991)
chr3 (1-50)||(33118902-33118951)
chr3 (1-49)||(31456690-31456738)
chr3 (2-46)||(48587143-48587187)
chr3 (1-51)||(26141583-26141633)
chr3 (4-50)||(36707478-36707524)
chr3 (1-50)||(8956762-8956811)
chr3 (13-50)||(17470405-17470442)
chr3 (1-50)||(24700005-24700054)
chr3 (1-50)||(35536626-35536675)
chr3 (1-51)||(20764966-20765016)
chr3 (1-51)||(30801784-30801834)
chr3 (13-51)||(45058615-45058653)
chr3 (13-50)||(11907371-11907408)
chr3 (1-50)||(21746234-21746283)
chr3 (4-45)||(26754700-26754741)
chr3 (1-49)||(13898106-13898154)
[»] chr1 (18 HSPs)
chr1 (1-51)||(9474927-9474977)
chr1 (1-50)||(2581915-2581964)
chr1 (1-51)||(37649197-37649247)
chr1 (1-51)||(47452371-47452421)
chr1 (1-50)||(3000319-3000368)
chr1 (4-51)||(48716336-48716383)
chr1 (1-51)||(27564786-27564836)
chr1 (1-50)||(23597142-23597191)
chr1 (1-50)||(38595154-38595203)
chr1 (13-50)||(38632384-38632421)
chr1 (1-50)||(51898734-51898783)
chr1 (1-51)||(50591051-50591101)
chr1 (1-50)||(8346439-8346488)
chr1 (1-50)||(32813247-32813296)
chr1 (14-50)||(50630458-50630494)
chr1 (4-50)||(41758805-41758851)
chr1 (14-47)||(26274435-26274468)
chr1 (3-51)||(41608546-41608594)
[»] chr2 (25 HSPs)
chr2 (1-50)||(9058480-9058529)
chr2 (1-50)||(33436151-33436200)
chr2 (1-47)||(28863458-28863504)
chr2 (1-51)||(40701477-40701527)
chr2 (1-50)||(5574539-5574588)
chr2 (1-50)||(7465786-7465835)
chr2 (1-50)||(17473020-17473069)
chr2 (5-50)||(30915463-30915508)
chr2 (4-47)||(19930874-19930917)
chr2 (4-51)||(27864703-27864750)
chr2 (1-51)||(13438342-13438392)
chr2 (13-51)||(28381718-28381756)
chr2 (1-51)||(40613953-40614003)
chr2 (1-50)||(10249433-10249482)
chr2 (1-50)||(32505699-32505748)
chr2 (4-51)||(4060684-4060731)
chr2 (16-50)||(38882879-38882913)
chr2 (5-50)||(20700815-20700860)
chr2 (1-50)||(33436211-33436260)
chr2 (1-44)||(3439985-3440028)
chr2 (1-51)||(43490120-43490170)
chr2 (13-50)||(26891567-26891604)
chr2 (4-49)||(41575138-41575183)
chr2 (2-50)||(2533124-2533172)
chr2 (14-50)||(17823784-17823820)
[»] chr5 (20 HSPs)
chr5 (1-49)||(36875654-36875702)
chr5 (1-51)||(14831813-14831863)
chr5 (1-47)||(18520935-18520981)
chr5 (1-51)||(33149689-33149739)
chr5 (1-51)||(35785198-35785248)
chr5 (1-50)||(2740274-2740323)
chr5 (1-50)||(36732993-36733042)
chr5 (8-51)||(40145406-40145449)
chr5 (1-51)||(28177774-28177824)
chr5 (1-51)||(42414353-42414403)
chr5 (2-52)||(26720514-26720564)
chr5 (2-52)||(26990263-26990313)
chr5 (1-50)||(3921316-3921365)
chr5 (1-50)||(13811652-13811701)
chr5 (1-50)||(15409661-15409710)
chr5 (1-50)||(33825375-33825424)
chr5 (1-50)||(35943943-35943992)
chr5 (1-50)||(2252219-2252268)
chr5 (1-50)||(6679698-6679747)
chr5 (14-50)||(41470480-41470516)
[»] chr6 (14 HSPs)
chr6 (3-50)||(6209518-6209565)
chr6 (1-47)||(22880709-22880755)
chr6 (1-51)||(32869677-32869727)
chr6 (1-51)||(17598553-17598603)
chr6 (4-51)||(31109454-31109501)
chr6 (3-50)||(31110812-31110859)
chr6 (1-51)||(15508075-15508125)
chr6 (1-51)||(31953081-31953131)
chr6 (1-50)||(15990093-15990142)
chr6 (1-50)||(30341411-30341460)
chr6 (1-50)||(11427616-11427667)
chr6 (16-50)||(22422084-22422118)
chr6 (13-50)||(29857827-29857864)
chr6 (1-50)||(31976248-31976297)
[»] scaffold1268 (1 HSPs)
scaffold1268 (8-51)||(987-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (8-51)||(987-1030)
[»] scaffold0321 (1 HSPs)
scaffold0321 (4-50)||(10163-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (13-50)||(4029-4066)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 32853850 - 32853684
Alignment:
Q  51 agttctaaatgggaaaggcaagacaaatcaataaacaaataaatgaacaggtattttatttagtctaaagttcattcaacaagagaaaaatacatcaaaa 150  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32853850 agttctaaataggaaaggcaagacaaatcaataaacaaataaataaacaggtattttatttagtctaaagttcattcaacaacagaaaaatacatcaaaa 32853751  T
Q  151 agtttgattgaactcaccaaaactgcaaaggtagaaaactaagaactcattgtgaaaatctcaatga 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32853750 agtttgattgaactcaccaaaactgcaaaggtagaaaactcagaactcattgtgaaaatctcaatga 32853684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7389438 - 7389389
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7389438 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8080435 - 8080483
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8080435 ggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35137582 - 35137532
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  35137582 gggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactca 35137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3434611 - 3434562
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  3434611 gggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11044237 - 11044188
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36361964 - 36362013
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36361964 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40957756 - 40957707
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  40957756 gggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19329891 - 19329841
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  19329891 gggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 19329841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31735933 - 31735883
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  31735933 gggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactca 31735883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38267089 - 38267039
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  38267089 gggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4999565 - 4999614
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  4999565 gggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36362075 - 36362026
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  36362075 gggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 38837254 - 38837217
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38837254 gtgtattgccacctaagggtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3784044 - 3783998
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 47  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||    
T  3784044 gggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 10343626 - 10343663
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  10343626 gtgtatttccacctaagggtgtctatgtatcattactc 10343663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19436238 - 19436287
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  19436238 gggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22343410 - 22343361
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  22343410 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36208222 - 36208173
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| || |||||| ||||||||||||||||||||||||| ||||    
T  36208222 gggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 21234448 - 21234400
Alignment:
Q  3 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||| |||||||| ||||||||| |||||||||||||| |||||    
T  21234448 gtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactca 21234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 41915789 - 41915741
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  41915789 ggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8238262 - 8238211
Alignment:
Q  1 gggtgtcaaagagtgtattgccaccta-agggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||| |||||    
T  8238262 gggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactca 8238211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 38044243 - 38044197
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| | |||||||||||||||||||||| |||||||||| ||||    
T  38044243 tgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 39255986 - 39256024
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  39255986 gtgtattgccacctaaggttgtctatgtatcataactca 39256024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 18207217 - 18207180
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  18207217 gtgtattgccacctaaggttgtctatgtatcataactc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35468906 - 35468955
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||   |||||||||| |||||| |||||||||||||||||||    
T  35468906 gggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactc 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46374853 - 46374902
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| |||| |||| ||||||||||||| |||||||||||||| ||||    
T  46374853 gggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20074985 - 20075035
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20074985 gggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactca 20075035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 504172 - 504222
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  504172 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15197382 - 15197332
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  15197382 gggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34012347 - 34012397
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  34012347 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 34012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1179991 - 1180040
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1179991 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12831096 - 12831047
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  12831096 gggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44507138 - 44507187
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  44507138 gggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 40423997 - 40424044
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  40423997 tgtcaaagggtgtattgccacctaagggtatctatgtatcattactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23122648 - 23122698
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  23122648 gggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactca 23122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10284682 - 10284731
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  10284682 gggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14547971 - 14547922
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  14547971 gggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactc 14547922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 15048233 - 15048282
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  15048233 ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37038528 - 37038479
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  37038528 gggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 4854915 - 4854963
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  4854915 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5957879 - 5957831
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattact 49  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  5957879 gggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 9122232 - 9122196
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattact 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  9122232 gtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 30479528 - 30479574
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||    
T  30479528 tgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16383426 - 16383377
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  16383426 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34307265 - 34307216
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  34307265 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10621138 - 10621182
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 45  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||    
T  10621138 gggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 14055646 - 14055692
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| |||||||||| |||||||||||||| ||||||||| ||||    
T  14055646 tgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43414632 - 43414682
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||| |||||    
T  43414632 gggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactca 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24307678 - 24307629
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||| ||||    
T  24307678 gggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24307844 - 24307893
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||| ||||    
T  24307844 gggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 32032761 - 32032725
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  32032761 tgtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3481703 - 3481653
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3481703 gggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactca 3481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6034093 - 6034043
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6034093 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 6034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11511513 - 11511563
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11511513 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 11511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 480498 - 480547
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  480498 gggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48183100 - 48183149
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  48183100 gggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50052479 - 50052528
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  50052479 gggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 29239932 - 29239886
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  29239932 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31910241 - 31910191
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  31910241 gggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactca 31910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 41236393 - 41236347
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  41236393 tgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50526222 - 50526272
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  50526222 gggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactca 50526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54473584 - 54473634
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  54473584 gggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactca 54473634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 29234301 - 29234345
Alignment:
Q  6 tcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  29234301 tcaaagggtgtattgccatctaagggtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 42044431 - 42044467
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||||||||||||||||||||||||    
T  42044431 tgtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40574828 - 40574778
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||| |||||    
T  40574828 gggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactca 40574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24995158 - 24995207
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||| ||||||||||| || |||||||||||    
T  24995158 gggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 55475240 - 55475191
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  55475240 gggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 19670769 - 19670816
Alignment:
Q  3 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  19670769 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23608284 - 23608235
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||| || |||||||||||||| |||||||||||    
T  23608284 gggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32767007 - 32766958
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | ||||||||||||||||| |||| |||||||||| ||||    
T  32767007 gggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 55079777 - 55079814
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  55079777 gtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8343215 - 8343263
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||||||||| ||| |||||||||| ||||    
T  8343215 ggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 47986244 - 47986208
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  47986244 tgtattgccacctaagggtgtttatgtatcataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53982060 - 53982010
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53982060 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11095404 - 11095453
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11095404 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49607463 - 49607414
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49607463 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33644249 - 33644199
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  33644249 gggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactca 33644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54868946 - 54868995
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  54868946 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52629349 - 52629305
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  52629349 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8076442 - 8076393
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  8076442 gggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14623890 - 14623939
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||| |||||||||||||||||||    
T  14623890 gggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27714942 - 27714991
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  27714942 gggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33118902 - 33118951
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  33118902 gggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31456738 - 31456690
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattact 49  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||    
T  31456738 gggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 48587143 - 48587187
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatt 46  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  48587143 ggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26141583 - 26141633
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||| |||| |||||||||||||||||| |||||||||||||| |||||    
T  26141583 gggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 36707478 - 36707524
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  36707478 tgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8956811 - 8956762
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||||    
T  8956811 gggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 17470442 - 17470405
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||| |||||||||||||||||||||    
T  17470442 gtgtattgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24700005 - 24700054
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  24700005 gggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35536675 - 35536626
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||||||| ||||| |||||||||||||||||||    
T  35536675 gggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20764966 - 20765016
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||| |||||||||||| |||||||||| ||||||||| |||| |||||    
T  20764966 gggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30801784 - 30801834
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||| ||||    
T  30801784 gggtatcaaagggtgtattatcacctaagggtgtctatgtatcattgctca 30801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 45058615 - 45058653
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  45058615 gtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11907408 - 11907371
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  11907408 gtgtattgtcacctaagggtgtctatgtatcataactc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21746234 - 21746283
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||| | || ||||||||||||||||| ||| |||||||||||||||    
T  21746234 gggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactc 21746283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 26754741 - 26754700
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcat 45  Q
    |||| ||| ||||||||||||||||||||||||||| |||||    
T  26754741 tgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13898106 - 13898154
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattact 49  Q
    ||||||||| | |||||||||||||||||| ||| ||| ||||||||||    
T  13898106 gggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9474927 - 9474977
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9474927 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 9474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2581964 - 2581915
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2581964 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37649247 - 37649197
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  37649247 gggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactca 37649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47452371 - 47452421
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  47452371 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 47452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3000368 - 3000319
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3000368 gggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 48716336 - 48716383
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||    
T  48716336 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27564786 - 27564836
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  27564786 gggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 27564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23597142 - 23597191
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  23597142 gggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38595203 - 38595154
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  38595203 gggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 38632384 - 38632421
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38632384 gtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51898734 - 51898783
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  51898734 gggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50591051 - 50591101
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| |||||    
T  50591051 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 50591101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8346439 - 8346488
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||||||||||| |||| ||||||||||||||||    
T  8346439 gggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32813296 - 32813247
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| |||| |||||||||||||||||| |||||||||||||| ||||    
T  32813296 gggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 50630494 - 50630458
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50630494 tgtattgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 41758851 - 41758805
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| |||||||||||  ||| |||||||||||||||||||||    
T  41758851 tgtcaaagggtgtattgccatttaatggtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 26274468 - 26274435
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcatta 47  Q
    ||||||||||| ||||||||||||||||||||||    
T  26274468 tgtattgccacataagggtgtctatgtatcatta 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 41608546 - 41608594
Alignment:
Q  3 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||| | |||||||||||||||||| ||| |||||||||| |||||    
T  41608546 gtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactca 41608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9058529 - 9058480
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9058529 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33436151 - 33436200
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33436151 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28863504 - 28863458
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28863504 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40701527 - 40701477
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  40701527 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5574539 - 5574588
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  5574539 gggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7465786 - 7465835
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  7465786 gggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17473069 - 17473020
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  17473069 gggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 30915508 - 30915463
Alignment:
Q  5 gtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  30915508 gtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19930874 - 19930917
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 47  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  19930874 tgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 27864750 - 27864703
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  27864750 tgtcaaagggtgtattgccacataagggtgtctatgtatcattactca 27864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13438392 - 13438342
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  13438392 gggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactca 13438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 28381718 - 28381756
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28381718 gtgtattgccacctaagggtgtctatgtatcattactca 28381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40613953 - 40614003
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  40613953 gggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 40614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10249433 - 10249482
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  10249433 gggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32505699 - 32505748
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  32505699 gggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 4060731 - 4060684
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||    
T  4060731 tgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactca 4060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 38882879 - 38882913
Alignment:
Q  16 tattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||||||||||||||||||||||||||    
T  38882879 tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 20700860 - 20700815
Alignment:
Q  5 gtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||||    
T  20700860 gtcaaagggtgtattgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33436260 - 33436211
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  33436260 gggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3440028 - 3439985
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatca 44  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||    
T  3440028 gggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43490170 - 43490120
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||| | |||||||| ||||||||||||| |||||||||| |||||    
T  43490170 gggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactca 43490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 26891567 - 26891604
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  26891567 gtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 41575183 - 41575138
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattact 49  Q
    |||||||| ||||||| ||| |||||| ||||||||||||||||||    
T  41575183 tgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 2533172 - 2533124
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  ||||||||||| ||||| |||||||||||||| ||||    
T  2533172 ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 17823820 - 17823784
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  17823820 tgtattgccacctaaggatgtatatgtatcattactc 17823784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36875654 - 36875702
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattact 49  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36875654 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14831863 - 14831813
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  14831863 gggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18520935 - 18520981
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18520935 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33149689 - 33149739
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  33149689 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 33149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35785248 - 35785198
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35785248 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 35785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2740323 - 2740274
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  2740323 gggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36732993 - 36733042
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36732993 gggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 40145449 - 40145406
Alignment:
Q  8 aaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  40145449 aaagggtgtattgccacctaagggtgtctatgtatcattactca 40145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28177824 - 28177774
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  28177824 gggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 28177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42414353 - 42414403
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  42414353 gggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactca 42414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 26720564 - 26720514
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcag 52  Q
    ||||| |||| |||||||||||||||||| |||||||||||||| ||||||    
T  26720564 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcag 26720514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 26990313 - 26990263
Alignment:
Q  2 ggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcag 52  Q
    ||||| |||| |||||||||||||||||| |||||||||||||| ||||||    
T  26990313 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcag 26990263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3921316 - 3921365
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  3921316 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13811701 - 13811652
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||   |||||||||||||||||||||||||||||| ||||||    
T  13811701 gggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15409661 - 15409710
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||| ||||    
T  15409661 gggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33825375 - 33825424
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  33825375 gggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35943943 - 35943992
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  35943943 gggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2252219 - 2252268
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||| ||| |||||||||| ||||    
T  2252219 gggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6679747 - 6679698
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||  |||||||||||||||| | |||||||||||||| ||||    
T  6679747 gggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 41470480 - 41470516
Alignment:
Q  14 tgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  41470480 tgtattgccacctaaaggtgtctatgtattattactc 41470516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 6209518 - 6209565
Alignment:
Q  3 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6209518 gtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22880709 - 22880755
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  22880709 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32869727 - 32869677
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32869727 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactca 32869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17598603 - 17598553
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  17598603 gggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactca 17598553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 31109454 - 31109501
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  31109454 tgtcaaagggtgtattgccacctaagggtgtctattaatcattactca 31109501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 31110812 - 31110859
Alignment:
Q  3 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  31110812 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15508075 - 15508125
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| |||||    
T  15508075 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31953081 - 31953131
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    ||||||||| | |||||||||||||||||| ||||||| ||||||||||||    
T  31953081 gggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactca 31953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15990093 - 15990142
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  15990093 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30341411 - 30341460
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  30341411 gggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11427667 - 11427616
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaag--ggtgtctatgtatcattactc 50  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  11427667 gggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 22422084 - 22422118
Alignment:
Q  16 tattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||||||| |||||||||||||||||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactc 22422118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 29857864 - 29857827
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  29857864 gtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31976297 - 31976248
Alignment:
Q  1 gggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    |||||| |||| || ||||||||||||||| |||||||||||||| ||||    
T  31976297 gggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 987 - 1030
Alignment:
Q  8 aaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||| |||||||||||||||| | ||||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 987 - 1030
Alignment:
Q  8 aaagagtgtattgccacctaagggtgtctatgtatcattactca 51  Q
    |||| |||||||||||||||| | ||||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 10163 - 10209
Alignment:
Q  4 tgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||  ||||||||||||||| |||||||||||||||| ||||    
T  10163 tgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 4066 - 4029
Alignment:
Q  13 gtgtattgccacctaagggtgtctatgtatcattactc 50  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  4066 gtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University