View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1031_low_2 (Length: 463)
Name: NF1031_low_2
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1031_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 8158142 - 8158049
Alignment:
| Q |
276 |
gaaggagtgttaaaattattattcactactggagttaatgtgtccttaaggcttcatatataagacgttccgacttcatgcattgaataccatg |
369 |
Q |
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| T |
8158142 |
gaaggagtgttaaaattattattcactactggagttaatgtgtccttaaggcttcatatataagacgttccgacttcatgcattgaataccatg |
8158049 |
T |
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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 4085576 - 4085691
Alignment:
| Q |
58 |
gaggaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcggctggaggaggggtttgatagaagctgcggt |
157 |
Q |
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| T |
4085576 |
gaggaggagcgtacggtggagtagagaagttgtggcaaggaggtccttgcgaaaaaacgattcatggcggca--aggaggggtttgatggaagctgcggt |
4085673 |
T |
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| Q |
158 |
gtagttagttccgttttt |
175 |
Q |
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| T |
4085674 |
gtagtaagttccgttttt |
4085691 |
T |
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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 44318073 - 44318139
Alignment:
| Q |
61 |
gaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcgg |
127 |
Q |
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| T |
44318073 |
gaggagcgtacggtggagtagagaaggcgtggtatggaggaccttgagaagaaacgattcatggcgg |
44318139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 43897378 - 43897426
Alignment:
| Q |
80 |
agagaaggcgtggtatggaggactttatgaagaaacgattcatggcggc |
128 |
Q |
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| T |
43897378 |
agagaaggcgtggtatggaggaccttgaaaagaaacgattcatggcggc |
43897426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 44307918 - 44307981
Alignment:
| Q |
61 |
gaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcgg |
127 |
Q |
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| T |
44307918 |
gaggagcgtacggtggagtcgagaaggcatggcaaggaggacctt---aagaaacgattcatggcgg |
44307981 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 18703060 - 18703130
Alignment:
| Q |
58 |
gaggaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcggc |
128 |
Q |
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| T |
18703060 |
gaggaggagcgtacggtggagtagagaagcagtggaaaggaggaccttgagaagaaacgattcatggcggc |
18703130 |
T |
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