View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1031_low_4 (Length: 407)
Name: NF1031_low_4
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1031_low_4 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 91 - 407
Target Start/End: Complemental strand, 33702128 - 33701813
Alignment:
| Q |
91 |
aatgtgacatgtattccaattgttcaagctatgataatatcaggttattagcaaatctatctaatgtaacttgttctgttaacttgagggatttaattag |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33702128 |
aatgtgacatgtattccaattgttcaagctatgataatatcaggttattagcaagtctatctaatgtaacttgttctgttaacttgagggatttaattag |
33702029 |
T |
|
| Q |
191 |
tccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaacaaaatgacattatttttgaagtatctatagtcagaagttttatttggtac |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33702028 |
tccgtttaatgaaacattaaatatgatttaatcgtgagattccgttgaacaaaatgacattatttttgaagtatctatagtcagaagttttatttggtac |
33701929 |
T |
|
| Q |
291 |
aacacatagtcaaaagttttactatgaaatgagatatttatactgcatagagattgttatatatgtacaagaccaatgattaaatttcacgaaacataat |
390 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||| |||||||||||||||||||| |||||| |
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| T |
33701928 |
aacccatagtcaaaagttttactatgaaatgagatatttatactgcataaagactgttatatgtgta-gagagcaatgattaaatttcacgaatcataat |
33701830 |
T |
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| Q |
391 |
aaagagttaacagatct |
407 |
Q |
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|||||||||||| |||| |
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| T |
33701829 |
aaagagttaacaaatct |
33701813 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 6094181 - 6094267
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaacaaaatgacattatttttgaagtatctatagtca |
273 |
Q |
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| T |
6094181 |
ttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacataaggaaactatttttaaagtatctgtagtca |
6094267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 10920251 - 10920297
Alignment:
| Q |
184 |
taattagtccgtttaatgaaacattaaatatgatttaatcgtgagac |
230 |
Q |
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||||||||| |||||||| |||||||| ||||| ||||||||||||| |
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| T |
10920251 |
taattagtctgtttaatggaacattaagtatgagttaatcgtgagac |
10920297 |
T |
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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 5587 - 5673
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaacaaaatgacattatttttgaagtatctatagtca |
273 |
Q |
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| T |
5587 |
ttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacataaggaaattattcttaaagtatatgtagtca |
5673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 21171382 - 21171328
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaaca |
241 |
Q |
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||||||||||| ||| |||||||||||| | ||||| ||||||||| |||||||| |
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| T |
21171382 |
ttagtccgtttcatggaacattaaatataacttaattgtgagaccccgttgaaca |
21171328 |
T |
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Target: scaffold0657 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 1051 - 1096
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccc |
232 |
Q |
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|||||||||||||||||||||||| ||| | ||||| ||||||||| |
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| T |
1051 |
ttagtccgtttaatgaaacattaagtataacttaattgtgagaccc |
1096 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 17285881 - 17285804
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaacaaaatgacattatttttgaagtat |
264 |
Q |
| |
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|||||| |||||||| |||||||| | ||| |||||||||| ||||| | ||| ||||||||||||| || |||||| |
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| T |
17285881 |
ttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccctagtaaactaaatgacattattcttaaagtat |
17285804 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 26963698 - 26963743
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccc |
232 |
Q |
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||||||||||||||| |||||||||||| | ||||| ||||||||| |
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| T |
26963698 |
ttagtccgtttaatggaacattaaatataacttaattgtgagaccc |
26963743 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 19692604 - 19692575
Alignment:
| Q |
297 |
tagtcaaaagttttactatgaaatgagata |
326 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19692604 |
tagtcaaaagttttactatgaaatgagata |
19692575 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 12750884 - 12750928
Alignment:
| Q |
187 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagacc |
231 |
Q |
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|||||||||||||||||||||||| ||| | ||||| |||||||| |
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| T |
12750884 |
ttagtccgtttaatgaaacattaagtataacttaattgtgagacc |
12750928 |
T |
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