View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1031_low_6 (Length: 386)
Name: NF1031_low_6
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1031_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 9504996 - 9505307
Alignment:
| Q |
4 |
gattaattgaaatttaagtgagtttgatctcgctcgaagtaaatttcattatattagaaacaatgacaaacacatgagttggtggttatcgaatattatc |
103 |
Q |
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| T |
9504996 |
gattaattgaaatttaagtgagtttgatctcgctcgaagtaaatttcattatattagaaacaatgacaaacatatgagttggtggttattgaatattatc |
9505095 |
T |
|
| Q |
104 |
gtgtatgtttgaaagagtgnnnnnnnnnnnnnn--aaagtatatcgtgacattttttcaagattattgatatgagaattgtgtgagaattaaaactgaat |
201 |
Q |
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| T |
9505096 |
gtgtatgtttgaaagagtgttttttttttttttttaaagtatatcgtgacattttttcaagattattgatatgagaattgtgtgagaattaaaattgaat |
9505195 |
T |
|
| Q |
202 |
gatagtatatagtggtagctaattttgaaaaagtgatctaaggatcaatcttttgcaaagttaacagtttagatcttcatatttcatgactggaataaac |
301 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9505196 |
gatagtatatagtggtatctaattttgaaaaagtggtctaaggatcaatcttttgcaaagttaacagtttagatcttcatatttcatgactggaataaac |
9505295 |
T |
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| Q |
302 |
ttgttgtgagca |
313 |
Q |
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|||||||||||| |
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| T |
9505296 |
ttgttgtgagca |
9505307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 40677390 - 40677480
Alignment:
| Q |
220 |
ctaattttgaaaaagtgatctaaggatcaatcttttgcaaagttaacagtttagatcttcatatttcatgactggaataaacttgttgtgagc |
312 |
Q |
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| T |
40677390 |
ctaattttgaaaaagtgatata-ggatcaatcttttgcaaagttaacaatttagatattcatatct-atgactgaaataaacttgttgtgagc |
40677480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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