View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_10 (Length: 345)
Name: NF10320_low_10
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34764447 - 34764144
Alignment:
| Q |
1 |
tggaaacataatagtaatttattttgcattttgcattatgtgtacatcattgaagaattaaaaatattttaattgaagccatctttgtagttgtaggccc |
100 |
Q |
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| T |
34764447 |
tggaaacataatagt--tttattttgcattttgcattatgtgtacatcattgaagaaataaaaatattttcattgaagccatctttgtagttgtaggccc |
34764350 |
T |
|
| Q |
101 |
cacaaagatagaagaaaattaggacctaaccctttaaacacgagtgagattgtaatgttatactgaatcaagagattattacctttataaaaggggagtg |
200 |
Q |
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| T |
34764349 |
cgcaaagatagaagaaaattaggacctaaccctttaaacacgagtgagactttaatgttatactgaatcaagagattattacctttataaaaggggagtg |
34764250 |
T |
|
| Q |
201 |
ttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataagaaccttgtttctattcttattatcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
34764249 |
ttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataataacattgtttctattcttagtatcct |
34764150 |
T |
|
| Q |
301 |
taacaa |
306 |
Q |
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|||||| |
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| T |
34764149 |
taacaa |
34764144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 34779841 - 34779959
Alignment:
| Q |
185 |
ttataaaaggggagtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataagaaccttgttt |
284 |
Q |
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||||||||||| | ||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||| || ||| |
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| T |
34779841 |
ttataaaagggaaatgtgggaaaccttttctctcagggcaaaacataaatcctatttgttctcaac----acctaagagtaactaataagaactttcttt |
34779936 |
T |
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| Q |
285 |
cta-ttcttattatccttaacaa |
306 |
Q |
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||| |||||| ||| |||||||| |
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| T |
34779937 |
ctacttcttagtatacttaacaa |
34779959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 34756278 - 34756208
Alignment:
| Q |
185 |
ttataaaaggggagtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacaccta |
255 |
Q |
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||||||||||| | ||| ||||||||||| |||| ||||||||| | ||||||||||||||||||||| |
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| T |
34756278 |
ttataaaagggaaatgtgggaaaccttttacttcagagcaaaacatacatcctatttgttctcaacaccta |
34756208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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