View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_11 (Length: 328)
Name: NF10320_low_11
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 2366294 - 2366587
Alignment:
| Q |
20 |
tatattttaatatccaaaaactaattcaaattaaaccacgtatattttactaaaactaatatattttttaaatagtcattcaaatccaatcaaactttat |
119 |
Q |
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| T |
2366294 |
tatattttaatatccaaaaactaattcaaattaaaccacgtatattttactaaaactaatatattttttaaatagtcattcaaatccaatcaaactttat |
2366393 |
T |
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| Q |
120 |
tttagattggataaccttttttcttttcttaatatcgatccaaagca-accccgaacacccctcagtatttacannnnnnnncctgctcacattcaattt |
218 |
Q |
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| T |
2366394 |
tttagattggataaccttttttctttttttaatatcgatccaaagcagaccccgaacacccctcagtatttacatttttttttctactcacatccaattt |
2366493 |
T |
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| Q |
219 |
gatgcacttatattttaatttccctctaatttcttccatcgaaactctagacccattcagtacccatcctaaaacccatcaaatgcatcataaa |
312 |
Q |
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| T |
2366494 |
gatgcacttatattttaatttccctctaatttcttccatcgaaactctagacccattcagtacccatcctaaaacccatcaaatgcatcataaa |
2366587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 2372071 - 2372130
Alignment:
| Q |
248 |
tttcttccatcgaaactctagacccattcagtacccatcctaaaacccatcaaatgcatc |
307 |
Q |
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| T |
2372071 |
tttcttccgttgaaaccctagacccattcagtacctatcccaaaacccatcaaatgcatc |
2372130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 12114622 - 12114570
Alignment:
| Q |
253 |
tccatcgaaactctagacccattcagtacccatcctaaaacccatcaaatgcat |
306 |
Q |
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| T |
12114622 |
tccatcgaaaccctagacccattcagtacccttcc-caaacccatcaaatgcat |
12114570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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