View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_15 (Length: 264)
Name: NF10320_low_15
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 1855515 - 1855750
Alignment:
| Q |
19 |
atgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcac |
118 |
Q |
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| T |
1855515 |
atgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcac |
1855614 |
T |
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| Q |
119 |
catagaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaa |
218 |
Q |
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| T |
1855615 |
catacaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaa |
1855714 |
T |
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| Q |
219 |
catatcaagaaactgccttataacactttccctatg |
254 |
Q |
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| T |
1855715 |
catattaagaaactgccttataacactttccctatg |
1855750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 1817664 - 1817472
Alignment:
| Q |
31 |
ctaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatt |
130 |
Q |
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| T |
1817664 |
ctaaaatagtaattgggaataacactggaaaatgcacaggtttagggtgttgccaagtggatattccttctagtatgaaaaatatcacaattgaagcatt |
1817565 |
T |
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| Q |
131 |
taaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataatttttctgtagaacatat |
223 |
Q |
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| T |
1817564 |
taaattcccaacttctaccctatctaaggaaaattcttgtagctattcctttattgcaaaacaaggatcctataaattttctgtagaccatat |
1817472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 37566990 - 37567171
Alignment:
| Q |
19 |
atgattttgatactaaaatggtaattggaaataacactggaaagtgcacagg------tttaggttgttgtgaagttgatattcctccacttatgaaaaa |
112 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||| |||||||| |||||| ||||| |||| ||||||||| | ||||||||| |
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| T |
37566990 |
atgattttgatcctaaaatggtaactgggaataacactggaaaatgcacaggcctaggtttagggtgttgccaagtggatattccttctagtatgaaaaa |
37567089 |
T |
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| Q |
113 |
tatcaccatagaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaa |
194 |
Q |
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| T |
37567090 |
tatcacaattgaaacatttaaattcccaacttctacactgtctatggaaaattcttgtagctattcctttattgcaaaacaa |
37567171 |
T |
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