View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_16 (Length: 253)
Name: NF10320_low_16
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 22276525 - 22276302
Alignment:
| Q |
18 |
agcttggagaaagagaacgtatttttgcaaaataacactgacaaaaacaaaatgaatatnnnnnnn-tgtttctgaaaatgtgcactactttgttgtagg |
116 |
Q |
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| T |
22276525 |
agcttggagaaagagaacatatttttgcaaaataacactgactaaaacaaaatgaatataaaaaaaatgtttctaaaaatgt-cactactttgttgcagg |
22276427 |
T |
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| Q |
117 |
agattactataatttttctacttttt-gcaatattaagataacttatatacttaattagataatactagtactacgaacggacgtgtaccaaaactttat |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||| |
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| T |
22276426 |
agattactataatttttctacttttttgcaatattaagataacttatatacttaattaggtaatattagtactacgaaccgacgtgtaccggaactttat |
22276327 |
T |
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| Q |
216 |
atcacatacgtaatgaattcttctc |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
22276326 |
atcacatacgtaatgaattcttctc |
22276302 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 41486372 - 41486275
Alignment:
| Q |
121 |
tactataatttttctactt-tttgcaatattaagataacttat-atacttaattagataatactagtactacgaacggacgtgtaccaaaactttata |
216 |
Q |
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| T |
41486372 |
tactataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacgcatacctaatctttata |
41486275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 10850767 - 10850692
Alignment:
| Q |
121 |
tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac |
194 |
Q |
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| T |
10850767 |
tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac |
10850692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 10878281 - 10878206
Alignment:
| Q |
121 |
tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac |
194 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||| |
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| T |
10878281 |
tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac |
10878206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 26150504 - 26150563
Alignment:
| Q |
99 |
gcactactttgttgtaggagattactataatttttctac--tttttgcaatattaagata |
156 |
Q |
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| T |
26150504 |
gcactagtttgttgtagcagactactataattcttctactttttttgcaatattaagata |
26150563 |
T |
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