View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_19 (Length: 249)
Name: NF10320_low_19
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_19 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 22210774 - 22210930
Alignment:
| Q |
19 |
ggacttacctcctaccaatattagattggtcatagtgaaaatagattcaaatttcttaagcaagatttagtttaagctttgtggatgaagaaatatggtt |
118 |
Q |
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| T |
22210774 |
ggacttacctcctaccaacattagattggtcatagtgaaaatagattcgaatttcttaagcaagatttagtttaagctttgtggatgaagaaatatggtt |
22210873 |
T |
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| Q |
119 |
gaaaggagaactccatccaaaaatggctgggaaaaatttgttgaacaagatttatcg |
175 |
Q |
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| T |
22210874 |
gaaaggagaactccatccaaaaatggctgggacaaatctgttgaacaagatttatcg |
22210930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 43605558 - 43605594
Alignment:
| Q |
213 |
agtaatgatatttgaacaaccttttactgacaacttt |
249 |
Q |
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| T |
43605558 |
agtaatgatatttgaacaaccttttagtgacaacttt |
43605594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 6127035 - 6126999
Alignment:
| Q |
213 |
agtaatgatatttgaacaaccttttactgacaacttt |
249 |
Q |
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| T |
6127035 |
agtaatgatatttgaacaaccttttaatgacaacttt |
6126999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 36364674 - 36364710
Alignment:
| Q |
213 |
agtaatgatatttgaacaaccttttactgacaacttt |
249 |
Q |
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| T |
36364674 |
agtaatgatatttgaacaaccttttgatgacaacttt |
36364710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 45521469 - 45521501
Alignment:
| Q |
213 |
agtaatgatatttgaacaaccttttactgacaa |
245 |
Q |
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| T |
45521469 |
agtaatgatatttgaacaaccttttagtgacaa |
45521501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 43791680 - 43791716
Alignment:
| Q |
213 |
agtaatgatatttgaacaaccttttactgacaacttt |
249 |
Q |
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| T |
43791680 |
agtaatgatatttgaacaaccttttagtgacaacttt |
43791716 |
T |
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