View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_22 (Length: 227)
Name: NF10320_low_22
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38742830 - 38742604
Alignment:
| Q |
1 |
agaagctggtggatgttgctgccaaagtatcaattgaaattgtcgtgttcaatatcttaatttgaagaaaatattgagcactagtatatcttttccatat |
100 |
Q |
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| T |
38742830 |
agaagctggtggatgttgctgccaaagtatcaattgaaattgtcgtgttcaatatcttaatttgaagaaaatattgagcactagtatatcttttccatat |
38742731 |
T |
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| Q |
101 |
gttctttttaataacttacgtcacgggtcttcatatcatttcgtgtggaatgcataatgttaatgaaagttcccatcat-nnnnnnnnnttgctattaaa |
199 |
Q |
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| T |
38742730 |
gttctttttaataacttacgtcaacggtcttcatctcatttcgtgtggaatgcataatgttaatgaaagtt-ccataataaaaaaaaaattgctattaaa |
38742632 |
T |
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| Q |
200 |
agtaaacaatcataatatataaatgaat |
227 |
Q |
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| T |
38742631 |
agtaaacaatcataatatataaatgaat |
38742604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 38742873 - 38742910
Alignment:
| Q |
135 |
atcatttcgtgtggaatgcataatgttaatgaaagttc |
172 |
Q |
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| T |
38742873 |
atcatttcgtgtggaatgcataatgttaatgaaagttc |
38742910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 1301201 - 1301168
Alignment:
| Q |
26 |
agtatcaattgaaattgtcgtgttcaatatctta |
59 |
Q |
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| T |
1301201 |
agtatcaattgaaattgtcgtgttcaatatctta |
1301168 |
T |
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