View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10320_low_23 (Length: 218)

Name: NF10320_low_23
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10320_low_23
NF10320_low_23
[»] chr3 (2 HSPs)
chr3 (38-214)||(8522210-8522386)
chr3 (1-37)||(8522151-8522187)
[»] chr5 (6 HSPs)
chr5 (94-179)||(42116886-42116971)
chr5 (91-174)||(42122646-42122729)
chr5 (94-174)||(42128044-42128124)
chr5 (1-38)||(42116809-42116846)
chr5 (109-168)||(34241407-34241466)
chr5 (114-168)||(34233634-34233688)
[»] chr4 (1 HSPs)
chr4 (78-174)||(11117289-11117386)
[»] chr6 (1 HSPs)
chr6 (114-179)||(25523879-25523943)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 8522210 - 8522386
Alignment:
Q  38 aaacttacaactgaaaatcaaactaactagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataaatacaaca 137  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8522210 aaacttacaactgaaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaaca 8522309  T
Q  138 ataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaactttggttcctcctcattcatgtcc 214  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  8522310 acaaaactacgacatttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtcc 8522386  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8522151 - 8522187
Alignment:
Q  1 tggaattttattatataacacatcttgtggcatgcac 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8522151 tggaattttattatataacacaacttgtggcatgcac 8522187  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 42116886 - 42116971
Alignment:
Q  94 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatt 179  Q
    |||||||||||| | |||| |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42116886 agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgatt 42116971  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 42122646 - 42122729
Alignment:
Q  91 aacagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattc 174  Q
    ||||||||||||||| |||||| |||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42122646 aacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgcaccatctgattctgattc 42122729  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 42128044 - 42128124
Alignment:
Q  94 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattc 174  Q
    |||||||||||| | || | |||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  42128044 agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattc 42128124  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42116809 - 42116846
Alignment:
Q  1 tggaattttattatataacacatcttgtggcatgcaca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42116809 tggaattttattatataacacatcttgtggcatgcaca 42116846  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 34241466 - 34241407
Alignment:
Q  109 aacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 168  Q
    |||| |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
T  34241466 aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34241407  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 34233688 - 34233634
Alignment:
Q  114 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 168  Q
    |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
T  34233688 acaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34233634  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 11117289 - 11117386
Alignment:
Q  78 tcaagcttgttttaa-cagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattc 174  Q
    |||||||| |||||| ||||||||||||| ||||||  |||  |||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  11117289 tcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattc 11117386  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25523943 - 25523879
Alignment:
Q  114 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatt 179  Q
    |||||||||||||||| || ||||||||| ||| |||||||||| |||||||||||||||||||||    
T  25523943 acaaaagagaaaataactaaaacaataaa-ctatgacatttgcatcatctgattctgattctgatt 25523879  T

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