View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10320_low_3 (Length: 510)

Name: NF10320_low_3
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10320_low_3
NF10320_low_3
[»] chr8 (6 HSPs)
chr8 (248-484)||(35842227-35842463)
chr8 (28-178)||(35842010-35842157)
chr8 (28-82)||(33220024-33220077)
chr8 (54-83)||(23559033-23559062)
chr8 (37-81)||(9384617-9384661)
chr8 (50-82)||(9418810-9418842)
[»] chr3 (1 HSPs)
chr3 (36-85)||(44833467-44833516)
[»] chr6 (1 HSPs)
chr6 (36-84)||(23608425-23608473)
[»] chr1 (2 HSPs)
chr1 (36-82)||(11821160-11821206)
chr1 (28-84)||(45688306-45688362)
[»] chr7 (1 HSPs)
chr7 (36-85)||(5060845-5060894)
[»] chr2 (1 HSPs)
chr2 (28-81)||(12969288-12969340)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 9e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 248 - 484
Target Start/End: Original strand, 35842227 - 35842463
Alignment:
Q  248 atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagctnnnnnnnnnnccatgaagccatccaaaac 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||||||||||||||||    
T  35842227 atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagctaaaaaaaaaacaatgaagccatccaaaac 35842326  T
Q  348 atgttagatatttcgtattttagaattcgaccatggttcatgagaaactcatagggttggaaaaagtaagtgtcttcagcattcacatggttcacaaatt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  35842327 atgttagatatttcgtattttagaattcgaccatggttcatgagaaactcatagggttggaaaaagtaagcgtcttcggcatttacatggttcacaaatt 35842426  T
Q  448 tgaccaatttctgttgtaaagtgtgtaaaagtataat 484  Q
    ||| || ||||||||||||||||||||||||||||||    
T  35842427 tgatcagtttctgttgtaaagtgtgtaaaagtataat 35842463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 35842010 - 35842157
Alignment:
Q  28 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattcttagtcagattagagccagagt-gtgctttccgtgtgtggtgctg 126  Q
    |||| |||||||||||||||||||  |||||| ||||||||||| | ||||||    ||| ||||||||||| |||| ||||||||| ||||||||||||    
T  35842010 ttttaaatttttattttggaactgctcggaactatttggataataatcagaat----agttagattagagccggagttgtgctttccatgtgtggtgctg 35842105  T
Q  127 catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842106 catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc 35842157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 33220077 - 33220024
Alignment:
Q  28 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattc 82  Q
    |||||||  |||| ||||||| ||| |||||||||||||||||||||||||||||    
T  33220077 ttttgaacatttactttggaa-tgagcggaaccatttggataatgagcagaattc 33220024  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 23559033 - 23559062
Alignment:
Q  54 cggaaccatttggataatgagcagaattct 83  Q
    ||||||||||||||||||||||||||||||    
T  23559033 cggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 9384661 - 9384617
Alignment:
Q  37 tttattttggaactgaacggaaccatttggataatgagcagaatt 81  Q
    ||||||||| || ||| |||||||||||| |||||||||||||||    
T  9384661 tttattttgaaaatgagcggaaccatttgaataatgagcagaatt 9384617  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 9418810 - 9418842
Alignment:
Q  50 tgaacggaaccatttggataatgagcagaattc 82  Q
    |||||||||||||||||||||||| ||||||||    
T  9418810 tgaacggaaccatttggataatgaacagaattc 9418842  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 44833516 - 44833467
Alignment:
Q  36 ttttattttggaactgaacggaaccatttggataatgagcagaattctta 85  Q
    ||||| ||||||| | ||||||||||||||| ||||||||||||||||||    
T  44833516 ttttactttggaaataaacggaaccatttgggtaatgagcagaattctta 44833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 23608473 - 23608425
Alignment:
Q  36 ttttattttggaactgaacggaaccatttggataatgagcagaattctt 84  Q
    ||||||||||| | ||||||||| |||||| ||||||||||||||||||    
T  23608473 ttttattttgggaatgaacggaatcatttgaataatgagcagaattctt 23608425  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
Q  36 ttttattttggaactgaacggaaccatttggataatgagcagaattc 82  Q
    ||||| ||||| | |||||| ||||||||||||||||||||||||||    
T  11821206 ttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 45688362 - 45688306
Alignment:
Q  28 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattctt 84  Q
    ||||||| ||||| ||||| | ||| | |||||||||||||||||||| ||||||||    
T  45688362 ttttgaacttttactttgggaatgagcagaaccatttggataatgagcggaattctt 45688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 5060894 - 5060845
Alignment:
Q  36 ttttattttggaactgaacggaaccatttggataatgagcagaattctta 85  Q
    ||||| ||||| | ||| ||||||||||||||||||||| ||||||||||    
T  5060894 ttttactttgggaatgagcggaaccatttggataatgagtagaattctta 5060845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 12969288 - 12969340
Alignment:
Q  28 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaatt 81  Q
    ||||||| ||||| ||||||| ||| ||||||||||| ||||||||||||||||    
T  12969288 ttttgaacttttactttggaa-tgagcggaaccatttagataatgagcagaatt 12969340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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