View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_4 (Length: 476)
Name: NF10320_low_4
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 32 - 465
Target Start/End: Original strand, 34007853 - 34008291
Alignment:
| Q |
32 |
acattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcctcaataatttatgattaatcttgaccaatggagt |
131 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007853 |
acattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcctcaataatttatgattaatcttgaccaatggagt |
34007952 |
T |
|
| Q |
132 |
ttataatttatt--ataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaa |
229 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34007953 |
ttataatttattttataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtagttatagccaa |
34008052 |
T |
|
| Q |
230 |
agtgccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagt |
329 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34008053 |
agtgccaattttgagagccaccaacaatgatgttcttaggttgttgttcagtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagt |
34008152 |
T |
|
| Q |
330 |
gtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttattattactag---taaggtgagaacatgaaca |
426 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
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| T |
34008153 |
gtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttattataactagtaataaggtgaggacatgaaca |
34008252 |
T |
|
| Q |
427 |
atgttggtggtggaggccatattgttttatatgattctt |
465 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||| |
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| T |
34008253 |
atgtttgtggtgaaggccatattgttttatatgattctt |
34008291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 160 - 446
Target Start/End: Original strand, 34000093 - 34000379
Alignment:
| Q |
160 |
agcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaagtgccaattttgagagccaccaacaatga |
259 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34000093 |
agcttaccgagggtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatga |
34000192 |
T |
|
| Q |
260 |
tcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatc |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
34000193 |
tcttcttaggttgttgttctgtcttatttatttgacgatgatggtttccaaatctggaccaccaatcagtatagttgaaattgccaaaagagggccagtc |
34000292 |
T |
|
| Q |
360 |
tttgtttgccatagtaactgtaaacattgaagtggttattattactagtaaggtgagaacatgaacaatgttggtggtggaggccat |
446 |
Q |
| |
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||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34000293 |
tttgtttgcaacagtaactgtaaacattgaagcggttattattactagtaaggtgaggacatgaacaatgttggtggtggaggccat |
34000379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 437
Target Start/End: Original strand, 34003407 - 34003792
Alignment:
| Q |
32 |
acattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcctcaataatttatgattaatcttgaccaatggagt |
131 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||| |
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| T |
34003407 |
acattggagtatatgttagggcttactagtgtattaatattaaatttataaaataatatatatgcctcaataatttat---taagtttgacaaatggagt |
34003503 |
T |
|
| Q |
132 |
ttataatttattataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaag |
231 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
34003504 |
ttataa--------------taaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaag |
34003589 |
T |
|
| Q |
232 |
tgccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgt |
331 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34003590 |
tgccaattttgagagccaccaacaatgatgttcttaggttgttgttcagtcttatttatttgatgatgatgatttccaaatctggaccaccaatcagtgt |
34003689 |
T |
|
| Q |
332 |
agttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttattattactagtaaggtgagaacatgaacaatgtt |
431 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||||| ||||| | |||||||||| ||| |
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| T |
34003690 |
agttaaaattgccaaaagagggccagtctttgtttgccatagtaaccgtaaacattgaagtgg---ttataactagaaaggtaaagacatgaacaaagtt |
34003786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 137 - 471
Target Start/End: Original strand, 33995377 - 33995714
Alignment:
| Q |
137 |
atttattataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaagtgcca |
236 |
Q |
| |
|
||||||| || ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| |
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|
| T |
33995377 |
atttattttatatattaaagtgaagcttactgagagtatcattgacgtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgcca |
33995476 |
T |
|
| Q |
237 |
attttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33995477 |
attttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatcagtgtagttg |
33995576 |
T |
|
| Q |
337 |
aaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttattattactag---taaggtgagaacatgaacaatgttgg |
433 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||| ||||||||| |||||||||||||| | |
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|
| T |
33995577 |
aaattgccaaaggagggccagtctttgtttgccacagtaactgtaaacattgaagcgcttattataactagtaataaggtgaggacatgaacaatgtttg |
33995676 |
T |
|
| Q |
434 |
tggtggaggccatattgttttatatgattcttctctct |
471 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||| ||||| |
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|
| T |
33995677 |
tggtgaaggccatattgtcttagatgattcttgtctct |
33995714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 33993355 - 33993476
Alignment:
| Q |
148 |
ataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaagtgccaattttgagagc |
247 |
Q |
| |
|
||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||| |
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|
| T |
33993355 |
ataataaagtgaaccataccgagagtatcgttgaggtaaaaaggaccattcttaatagctcaatcagaatagttgtagccaaagtgccaattttgagagc |
33993454 |
T |
|
| Q |
248 |
caccaacaatgatcttcttagg |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33993455 |
caccaacaatgatcttcttagg |
33993476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 33995335 - 33995382
Alignment:
| Q |
61 |
tgtataaatattaaatttataaaataatatgtatgcctcaataatttat |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33995335 |
tgtataaatattaa-tttataaaataatatatatgcctcaatgatttat |
33995382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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