View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10320_low_7 (Length: 356)

Name: NF10320_low_7
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10320_low_7
NF10320_low_7
[»] scaffold0026 (1 HSPs)
scaffold0026 (17-356)||(2431-2766)
[»] chr7 (10 HSPs)
chr7 (65-101)||(21835315-21835351)
chr7 (65-101)||(2751435-2751471)
chr7 (65-101)||(3851921-3851957)
chr7 (65-101)||(7275441-7275477)
chr7 (65-101)||(16374158-16374194)
chr7 (65-101)||(22120052-22120088)
chr7 (65-101)||(28089983-28090019)
chr7 (65-97)||(31197758-31197790)
chr7 (65-101)||(31712903-31712939)
chr7 (65-101)||(40542911-40542947)
[»] chr6 (11 HSPs)
chr6 (65-109)||(9690639-9690683)
chr6 (65-100)||(9844099-9844134)
chr6 (65-101)||(3222637-3222673)
chr6 (65-101)||(9239135-9239171)
chr6 (65-101)||(11449031-11449067)
chr6 (65-101)||(14213042-14213078)
chr6 (65-101)||(15360099-15360135)
chr6 (65-101)||(15730496-15730532)
chr6 (65-101)||(21982322-21982358)
chr6 (65-101)||(34147506-34147542)
chr6 (65-101)||(34160122-34160158)
[»] chr5 (14 HSPs)
chr5 (65-101)||(38630980-38631016)
chr5 (65-101)||(6014281-6014317)
chr5 (65-101)||(8484662-8484698)
chr5 (65-101)||(10631290-10631326)
chr5 (65-101)||(11926502-11926538)
chr5 (73-101)||(13659254-13659282)
chr5 (65-101)||(18207367-18207403)
chr5 (65-101)||(19456212-19456248)
chr5 (65-101)||(22693095-22693131)
chr5 (65-101)||(27498732-27498768)
chr5 (65-101)||(34310302-34310338)
chr5 (73-109)||(35425165-35425201)
chr5 (65-101)||(37495214-37495250)
chr5 (65-101)||(41351105-41351141)
[»] chr4 (13 HSPs)
chr4 (65-109)||(33696280-33696324)
chr4 (65-109)||(34723951-34723995)
chr4 (65-100)||(51595183-51595218)
chr4 (65-101)||(5609203-5609239)
chr4 (65-101)||(19660533-19660569)
chr4 (65-97)||(20566514-20566546)
chr4 (65-101)||(23639784-23639820)
chr4 (65-101)||(23645442-23645478)
chr4 (65-101)||(27528796-27528832)
chr4 (65-101)||(34844759-34844795)
chr4 (65-101)||(40058853-40058889)
chr4 (73-109)||(43719096-43719132)
chr4 (65-101)||(52983779-52983815)
[»] chr3 (15 HSPs)
chr3 (65-101)||(21363103-21363139)
chr3 (65-101)||(3747741-3747777)
chr3 (65-101)||(7485532-7485568)
chr3 (65-101)||(8097280-8097316)
chr3 (65-101)||(10083820-10083856)
chr3 (65-101)||(10190743-10190779)
chr3 (65-101)||(24165716-24165752)
chr3 (65-101)||(24407421-24407457)
chr3 (65-101)||(26174273-26174309)
chr3 (65-101)||(30807154-30807190)
chr3 (65-101)||(39041853-39041889)
chr3 (65-101)||(49258263-49258299)
chr3 (65-101)||(52821637-52821673)
chr3 (65-101)||(53424178-53424214)
chr3 (65-101)||(53848435-53848471)
[»] chr2 (7 HSPs)
chr2 (73-109)||(45132439-45132475)
chr2 (65-101)||(11941211-11941247)
chr2 (65-101)||(25293319-25293355)
chr2 (65-101)||(27290734-27290770)
chr2 (65-101)||(29361708-29361744)
chr2 (73-101)||(36242321-36242349)
chr2 (65-101)||(44946054-44946090)
[»] chr1 (8 HSPs)
chr1 (65-109)||(9500356-9500400)
chr1 (65-100)||(48699920-48699955)
chr1 (65-101)||(4621238-4621274)
chr1 (65-101)||(7766728-7766764)
chr1 (65-101)||(14603956-14603992)
chr1 (65-101)||(17935929-17935965)
chr1 (65-101)||(24122183-24122219)
chr1 (65-101)||(50202706-50202741)
[»] scaffold0576 (1 HSPs)
scaffold0576 (65-101)||(5083-5119)
[»] scaffold0070 (1 HSPs)
scaffold0070 (65-101)||(40484-40520)
[»] chr8 (8 HSPs)
chr8 (65-101)||(2639412-2639448)
chr8 (65-101)||(3734624-3734660)
chr8 (65-101)||(4718809-4718845)
chr8 (65-101)||(8765527-8765563)
chr8 (65-101)||(9713618-9713654)
chr8 (65-101)||(21603394-21603430)
chr8 (65-101)||(28193638-28193674)
chr8 (65-101)||(34237656-34237692)


Alignment Details
Target: scaffold0026 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 2431 - 2766
Alignment:
Q  17 acatcatgacctcttaaaagttttaagacttctctgnnnnnnnnnnnnaaactcgatatccgatccaagaatcgattaatccgagaagaccaaagtttta 116  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  2431 acatcatgacctcttaaaagttttaagacttctctgttttttttttt-aaactcgatatccgattcaagaatcgactaatccgagaagaccaaagtttta 2529  T
Q  117 agacttcttaacaacttctgcattgtagattttcaaacctcctttccattttccactccaaacttcatacaatccaaaatgaagttcaagatctgtttca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2530 agacttcttaacaacttctgcattgtagattttcaaacctcctttccattttccactccaaacttcatacaatccaaaatgaagttcaagatctgtttca 2629  T
Q  217 tcccttttcacctcaatttcaagcttaagcttatccttaacttcttgaatggtg---gttccattaccacaatctagtttcactggctcatatttatatg 313  Q
    || |||||||||||||||||      ||||||||||||||||||| |||||| |    ||   |||||||||||||||||||||| |||||||||||||     
T  2630 tcacttttcacctcaatttc------aagcttatccttaacttctggaatggggtctttttttttaccacaatctagtttcactgcctcatatttatata 2723  T
Q  314 ttcccgttttcccaactttagccatcaccagtacatctgtgct 356  Q
     |||| |||||||||||||||||||||| ||||||||||||||    
T  2724 atccctttttcccaactttagccatcacaagtacatctgtgct 2766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 21835351 - 21835315
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||||||||||||||||||||||| |||||||||    
T  21835351 aaactcgatatccgatccaagaatcgactaatccgag 21835315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 2751471 - 2751435
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  2751471 aaactcggtatccgatccaagaatcgactaatccgag 2751435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 3851957 - 3851921
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  3851957 aaactcggtatccgatccaagaatcgactaatccgag 3851921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 7275477 - 7275441
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  7275477 aaactcggtatccgatccaagaatcgactaatccgag 7275441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 16374194 - 16374158
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  16374194 aaactcggtatccgatccaagaatcgactaatccgag 16374158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 22120088 - 22120052
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  22120088 aaactcggtatccgatccaagaatcgactaatccgag 22120052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 28090019 - 28089983
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  28090019 aaactcggtatccgatccaagaatcgactaatccgag 28089983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 31197790 - 31197758
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatc 97  Q
    ||||||||||||||||||||||||||| |||||    
T  31197790 aaactcgatatccgatccaagaatcgactaatc 31197758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 31712903 - 31712939
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  31712903 aaactcggtatccgatccaagaatcgactaatccgag 31712939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 40542911 - 40542947
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40542911 aaactcggtatccgatccaagaatcgactaatccgag 40542947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 9690639 - 9690683
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||    
T  9690639 aaactcggtatccgatccaagaatcgactaatccgagaggaccaa 9690683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 9844134 - 9844099
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccga 100  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9844134 aaactcgatatccgatccaagaatcgactaatccga 9844099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 3222637 - 3222673
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  3222637 aaactcggtatccgatccaagaatcgactaatccgag 3222673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 9239171 - 9239135
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  9239171 aaactcggtatccgatccaagaatcgactaatccgag 9239135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 11449067 - 11449031
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    |||||||||||||||| |||||||||| |||||||||    
T  11449067 aaactcgatatccgattcaagaatcgactaatccgag 11449031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 14213078 - 14213042
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  14213078 aaactcggtatccgatccaagaatcgactaatccgag 14213042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 15360099 - 15360135
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  15360099 aaactcggtatccgatccaagaatcgactaatccgag 15360135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 15730496 - 15730532
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15730496 aaactcgatatccgatcaaagaatcgactaatccgag 15730532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 21982322 - 21982358
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  21982322 aaactcggtatccgatccaagaatcgactaatccgag 21982358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 34147542 - 34147506
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  34147542 aaactcggtatccgatccaagaatcgactaatccgag 34147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 34160158 - 34160122
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  34160158 aaactcggtatccgatccaagaatcgactaatccgag 34160122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 38630980 - 38631016
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38630980 aaactcggtatccgatccaagaatcgattaatccgag 38631016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 6014281 - 6014317
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  6014281 aaactcgatatccgatccaagaatcgactaattcgag 6014317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8484662 - 8484698
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  8484662 aaactcggtatccgatccaagaatcgactaatccgag 8484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10631290 - 10631326
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  10631290 aaactcggtatccgatccaagaatcgactaatccgag 10631326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 11926502 - 11926538
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  11926502 aaactcggtatccgatccaagaatcgactaatccgag 11926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 13659254 - 13659282
Alignment:
Q  73 tatccgatccaagaatcgattaatccgag 101  Q
    |||||||||||||||||||||||||||||    
T  13659254 tatccgatccaagaatcgattaatccgag 13659282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 18207403 - 18207367
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  18207403 aaactcggtatccgatccaagaatcgactaatccgag 18207367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 19456212 - 19456248
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  19456212 aaactcggtatccgatccaagaatcgactaatccgag 19456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 22693131 - 22693095
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  22693131 aaactcggtatccgatccaagaatcgactaatccgag 22693095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 27498732 - 27498768
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  27498732 aaactcggtatccgatccaagaatcgactaatccgag 27498768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 34310338 - 34310302
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34310338 aaactcggtatccgatccaagaatcgattaattcgag 34310302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 35425201 - 35425165
Alignment:
Q  73 tatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  35425201 tatccgatccaagaatcgactaatccgagaggaccaa 35425165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 37495250 - 37495214
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  37495250 aaactcggtatccgatccaagaatcgactaatccgag 37495214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 41351105 - 41351141
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  41351105 aaactcggtatccgatccaagaatcgactaatccgag 41351141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 33696280 - 33696324
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    |||||||||||||||||||||||| || |||||||||| ||||||    
T  33696280 aaactcgatatccgatccaagaattgactaatccgagaggaccaa 33696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 34723995 - 34723951
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||    
T  34723995 aaactcggtatccgatccaagaatcgactaatccgagaggaccaa 34723951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 51595218 - 51595183
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccga 100  Q
    ||||||| ||||||||||||||||||||||||||||    
T  51595218 aaactcggtatccgatccaagaatcgattaatccga 51595183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 5609203 - 5609239
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  5609203 aaactcggtatccgatccaagaatcgactaatccgag 5609239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 19660533 - 19660569
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  19660533 aaactcggtatccgatccaagaatcgactaatccgag 19660569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 20566546 - 20566514
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatc 97  Q
    ||||||||||||||||||||||||||| |||||    
T  20566546 aaactcgatatccgatccaagaatcgactaatc 20566514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 23639820 - 23639784
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  23639820 aaactcggtatccgatccaagaatcgactaatccgag 23639784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 23645478 - 23645442
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  23645478 aaactcggtatccgatccaagaatcgactaatccgag 23645442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 27528796 - 27528832
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  27528796 aaactcggtatccgatccaagaatcgactaatccgag 27528832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 34844759 - 34844795
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  34844759 aaactcggtatccgatccaagaatcgactaatccgag 34844795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 40058853 - 40058889
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40058853 aaactcggtatccgatccaagaatcgactaatccgag 40058889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 43719096 - 43719132
Alignment:
Q  73 tatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  43719096 tatccgatccaagaatcgactaatccgagatgaccaa 43719132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 52983815 - 52983779
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  52983815 aaactcggtatccgatccaagaatcgactaatccgag 52983779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 21363139 - 21363103
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21363139 aaactcggtatccgatccaagaatcgattaatccgag 21363103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 3747777 - 3747741
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  3747777 aaactcggtatccgatccaagaatcgactaatccgag 3747741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 7485532 - 7485568
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  7485532 aaactcggtatccgatccaagaatcgactaatccgag 7485568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8097280 - 8097316
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  8097280 aaactcggtatccgatccaagaatcgactaatccgag 8097316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10083820 - 10083856
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  10083820 aaactcggtatccgatccaagaatcgactaatccgag 10083856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10190743 - 10190779
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  10190743 aaactcggtatccgatccaagaatcgactaatccgag 10190779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 24165716 - 24165752
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  24165716 aaactcggtatccgatccaagaatcgactaatccgag 24165752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 24407457 - 24407421
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  24407457 aaactcggtatccgatccaagaatcgactaatccgag 24407421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 26174309 - 26174273
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  26174309 aaactcggtatccgatccaagaatcgactaatccgag 26174273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 30807154 - 30807190
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  30807154 aaactcggtatccgatccaagaatcgactaatccgag 30807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 39041853 - 39041889
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  39041853 aaactcggtatccgatccaagaatcgactaatccgag 39041889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 49258263 - 49258299
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  49258263 aaactcggtatccgatccaagaatcgactaatccgag 49258299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 52821637 - 52821673
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  52821637 aaactcggtatccgatccaagaatcgactaatccgag 52821673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 53424178 - 53424214
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  53424178 aaactcggtatccgatccaagaatcgactaatccgag 53424214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 53848435 - 53848471
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  53848435 aaactcggtatccgatccaagaatcgactaatccgag 53848471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 45132475 - 45132439
Alignment:
Q  73 tatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    |||||||||||||||||||||||||||||| ||||||    
T  45132475 tatccgatccaagaatcgattaatccgagaggaccaa 45132439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 11941211 - 11941247
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  11941211 aaactcggtatccgatccaagaatcgactaatccgag 11941247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 25293355 - 25293319
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  25293355 aaactcggtatccgatccaagaatcgactaatccgag 25293319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 27290770 - 27290734
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  27290770 aaactcggtatccgatccaagaatcgactaatccgag 27290734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 29361744 - 29361708
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29361744 aaactcgatatccgatccaggaatcaattaatccgag 29361708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 36242321 - 36242349
Alignment:
Q  73 tatccgatccaagaatcgattaatccgag 101  Q
    |||||||||||||||||||||||||||||    
T  36242321 tatccgatccaagaatcgattaatccgag 36242349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 44946054 - 44946090
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  44946054 aaactcggtatccgatccaagaatcgactaatccgag 44946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 9500356 - 9500400
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgagaagaccaa 109  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||    
T  9500356 aaactcgatatccgatccaagaatcgactaatccgaagagaccaa 9500400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 48699955 - 48699920
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccga 100  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48699955 aaactcgatatccgatccaagaatcgactaatccga 48699920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 4621238 - 4621274
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  4621238 aaactcggtatccgatccaagaatcgactaatccgag 4621274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 7766728 - 7766764
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    |||||||||||||||| |||||||||| |||||||||    
T  7766728 aaactcgatatccgattcaagaatcgactaatccgag 7766764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 14603992 - 14603956
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  14603992 aaactcggtatccgatccaagaatcgactaatccgag 14603956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 17935965 - 17935929
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  17935965 aaactcggtatccgatccaagaatcgactaatccgag 17935929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 24122219 - 24122183
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  24122219 aaactcggtatccgatccaagaatcgactaatccgag 24122183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 50202741 - 50202706
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||||||||||||| |||||||||||||||||||    
T  50202741 aaactcgatatccgatc-aagaatcgattaatccgag 50202706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 5083 - 5119
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  5083 aaactcggtatccgatccaagaatcgactaatccgag 5119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 40520 - 40484
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40520 aaactcggtatccgatccaagaatcgactaatccgag 40484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 2639412 - 2639448
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  2639412 aaactcggtatccgatccaagaatcgactaatccgag 2639448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 3734624 - 3734660
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  3734624 aaactcggtatccgatccaagaatcgactaatccgag 3734660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 4718845 - 4718809
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  4718845 aaactcggtatccgatccaagaatcgactaatccgag 4718809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8765527 - 8765563
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  8765527 aaactcggtatccgatccaagaatcgactaatccgag 8765563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 9713654 - 9713618
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  9713654 aaactcggtatccgatccaagaatcgactaatccgag 9713618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 21603430 - 21603394
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  21603430 aaactcggtatccgatccaagaatcgactaatccgag 21603394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 28193674 - 28193638
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  28193674 aaactcggtatccgatccaagaatcgactaatccgag 28193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 34237656 - 34237692
Alignment:
Q  65 aaactcgatatccgatccaagaatcgattaatccgag 101  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  34237656 aaactcggtatccgatccaagaatcgactaatccgag 34237692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University