View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10320_low_9 (Length: 352)
Name: NF10320_low_9
Description: NF10320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10320_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45271786 - 45272124
Alignment:
| Q |
1 |
atatatgtgctttatgtgtgtacgtctaaatga------tttagacttgtgaaccaaccaagtgtatctcataagaataagatagactattttgaagttt |
94 |
Q |
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|||||| | |||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271786 |
atatatatactttatgtgtgtacatctaaatgaattttatttaggcttgtggaccaaccaagtgtatctcataagaataagatagactattttgaagttt |
45271885 |
T |
|
| Q |
95 |
gctataaaggcaatctggttgcattattctaaatatgatcaaatagtattacatacatttagctaccagtatatgtggattcagaagaaattgaacccaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45271886 |
gctataaaggcaatctggttgcattattctaaatatgatcaaatagtattacatacatttagctaccagtatatgtggattcagaagaaattgaaccaaa |
45271985 |
T |
|
| Q |
195 |
aaatgcctagaaattcccaaacaaagaaacacttatttctaagttattatataattaatgtgtcttcaacattcgttctagcaggaactaatgtattaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45271986 |
aaatgcctagaaattcccaaacaaagaaacacttatttctaagttattatataattaatgtgtcttcaacattcgttctagcagcaactaatgtattaat |
45272085 |
T |
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| Q |
295 |
caatgatccgcaagaagttttcttctatcattgccagcg |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45272086 |
caatgatccgcaagaagttttcttctatcattgccagcg |
45272124 |
T |
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