View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10321_high_2 (Length: 219)
Name: NF10321_high_2
Description: NF10321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10321_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 13837085 - 13836959
Alignment:
| Q |
1 |
atcttttttgtttctctttttcttgttgtagtcgacggtgtaaaaaggaacgatagtggacatagagatagtaaactcattctcatgtatattttcgttt |
100 |
Q |
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| T |
13837085 |
atcttttttgtttctctttttcttgttgtagtcgacggtgaaaaaaggaacgatagtggacatagagataataaactcattctcatatatattttcgttt |
13836986 |
T |
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| Q |
101 |
gtttatcttatacataatcattctacc |
127 |
Q |
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| T |
13836985 |
gtttatcttatacataatcattctacc |
13836959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 13825136 - 13825258
Alignment:
| Q |
1 |
atcttttttgtttctctttttcttgttgtagtcgacggtgtaaaaaggaacgatagtggacatagagatagtaaactcattctcatgtatattttcgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||| || | | | | ||||| ||||||||||||||||| |||||||||||| |
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| T |
13825136 |
atcttttttgtttctctttttcttgttgtagtcgacagtggaaaaaggatcggtggagaaaatagacatagtaaactcattctc----atattttcgttt |
13825231 |
T |
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| Q |
101 |
gtttatcttatacataatcattctacc |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13825232 |
gtttatcttatacataatcattctacc |
13825258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 13836923 - 13836874
Alignment:
| Q |
159 |
cactacaggacaatgtgctaatgaccacgagtgttatagactattttcat |
208 |
Q |
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||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
13836923 |
cactacaggacaatgtgctgatgactacgagtgttatcgactattttcat |
13836874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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