View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10321_low_3 (Length: 398)
Name: NF10321_low_3
Description: NF10321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10321_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 52699317 - 52699651
Alignment:
| Q |
1 |
agttacaaaggtttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtgtaatttagtctta |
100 |
Q |
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| T |
52699317 |
agttacaaagttttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtgtaatttagtctta |
52699416 |
T |
|
| Q |
101 |
gttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggag |
200 |
Q |
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| T |
52699417 |
gttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggag |
52699516 |
T |
|
| Q |
201 |
tgtatgcacagtgacacaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtg |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||| || |||| ||||| |||||| || |
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| T |
52699517 |
tgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatg |
52699616 |
T |
|
| Q |
301 |
tcaaccttctttcttagtcaagccagcatcatgaa |
335 |
Q |
| |
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||||||| ||||| |||||||||| |||||||| |
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| T |
52699617 |
tcaacctggtttctaagtcaagccaaaatcatgaa |
52699651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 116 - 390
Target Start/End: Original strand, 52722728 - 52723002
Alignment:
| Q |
116 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
215 |
Q |
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| T |
52722728 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52722827 |
T |
|
| Q |
216 |
acaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
315 |
Q |
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| T |
52722828 |
acaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
52722927 |
T |
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| Q |
316 |
agtcaagccagcatcatgaatagaaaactaggaaacatgttcgaaatcccaacaggttctgcccctgtctgtgct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
52722928 |
agtcaagccagcatcatgaatagaaaactaggaaacaagttcgaaatcccaacaggttctgtccctgtctttgct |
52723002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 52713706 - 52713975
Alignment:
| Q |
116 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
215 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
52713706 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgac |
52713805 |
T |
|
| Q |
216 |
acaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
315 |
Q |
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|||||| |||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
52713806 |
acaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttcttttta |
52713905 |
T |
|
| Q |
316 |
agtcaagccagcatcatgaatagaaaactaggaaacatgttcgaaatcccaacaggttctgcccctgtct |
385 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| |
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| T |
52713906 |
agtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtct |
52713975 |
T |
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