View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10321_low_6 (Length: 234)
Name: NF10321_low_6
Description: NF10321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10321_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 25909364 - 25909160
Alignment:
| Q |
18 |
agatgtcgaataagggaatgaataattaatattgttcaaaatggtgtccttgttcttcacaccaaatagaagtgcttttgacattaaggatcaatctgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25909364 |
agatgtcgaataagggaatgaataattaatattgttcaaaatggtgtccttgttcttcacaccaaatagaagtgcttttgacattaaggatcaatctgaa |
25909265 |
T |
|
| Q |
118 |
gccaaaatagta-gtacttttgaactagacccaagtacaaattttcacagagacccatcatcgtggtcccagttacattcatcaacaggtcctcaaccaa |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25909264 |
gccaaaatagtaggtacttttgaactagacccaagtacaaattttcacagaaatccatcatcgtggtcccagttacattcatcaacagatcctcaaccaa |
25909165 |
T |
|
| Q |
217 |
aactc |
221 |
Q |
| |
|
||||| |
|
|
| T |
25909164 |
aactc |
25909160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 40421725 - 40421859
Alignment:
| Q |
86 |
gaagtgcttttgacattaaggatcaatctgaagccaaaatagtagtacttttgaactagacccaagtacaaattttcacagagacccatcatcgtggtcc |
185 |
Q |
| |
|
|||||||||||||||||||| | |||| || ||||||||||| | ||||||||||||||| |||||||||||||||||| | | || |||||| |||| |
|
|
| T |
40421725 |
gaagtgcttttgacattaagaaccaatttgcagccaaaatagaaatacttttgaactagatccaagtacaaattttcac-taaaaccgtcatcgcagtcc |
40421823 |
T |
|
| Q |
186 |
cagttacattcatcaacaggtcctcaaccaaaactc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40421824 |
cagttacattcatcaacaggtcctcaaccaaaactc |
40421859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 40421683 - 40421725
Alignment:
| Q |
18 |
agatgtcgaataagggaatgaataattaatattgttcaaaatg |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
40421683 |
agatgtcgaataagggaatgaataattaatgttgtttaaaatg |
40421725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University