View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10322_high_2 (Length: 392)

Name: NF10322_high_2
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10322_high_2
NF10322_high_2
[»] chr6 (15 HSPs)
chr6 (18-378)||(21205498-21205866)
chr6 (18-147)||(21155529-21155658)
chr6 (38-151)||(21296027-21296140)
chr6 (37-149)||(21274599-21274711)
chr6 (18-145)||(21140588-21140715)
chr6 (38-149)||(21212980-21213091)
chr6 (37-149)||(21174902-21175010)
chr6 (18-146)||(21209387-21209511)
chr6 (168-232)||(21305712-21305776)
chr6 (95-149)||(21189521-21189575)
chr6 (91-149)||(21233878-21233936)
chr6 (38-85)||(21244224-21244271)
chr6 (44-85)||(21187592-21187633)
chr6 (45-85)||(21186965-21187005)
chr6 (115-147)||(21244286-21244318)
[»] scaffold1787 (2 HSPs)
scaffold1787 (152-273)||(1238-1359)
scaffold1787 (29-149)||(1072-1192)
[»] scaffold0060 (1 HSPs)
scaffold0060 (34-149)||(23070-23185)
[»] scaffold0016 (2 HSPs)
scaffold0016 (70-149)||(36171-36250)
scaffold0016 (80-144)||(55729-55793)
[»] chr5 (1 HSPs)
chr5 (31-148)||(2323272-2323388)
[»] chr4 (2 HSPs)
chr4 (302-364)||(47879942-47880004)
chr4 (299-364)||(44728331-44728396)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 21205866 - 21205498
Alignment:
Q  18 ttaaatgtatagtatatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21205866 ttaaatgtatagtatatccagtttgtccattgaacatgaaaatacaaattagattaagagatttctaatcatttgtgtgcaatatcgaaagatgcaagta 21205767  T
Q  118 aataagtttgattgtgtgattttaggactataaagttcttaacctttatcaatcacaaatgcaacaataaccaacttcccttttccgatgcatacctttg 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21205766 aataagtttgattgtgtgattttaggacaataaagttcttaacctttatcaatcacaaatgcaacaataaccaacttcccttttccgatgcatacctttg 21205667  T
Q  218 acattaaggttcaccatttcattgctgcatttatgaacaaagtgtgggg--atccaccactgctgtagaactcattggatgataaatggctgaaacttaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21205666 acattaaggttcaccatttcattgctgcatttatgaacaaagtttggggatatccaccactgctgtagaactcattggatgataaatggctgaaacttaa 21205567  T
Q  316 ctga------aacaacttattgaaaatgtagtgtttacagttccagtttcattcactcagttccagttt 378  Q
     |||      | |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  21205566 ttgaaccaagaccaacttatagaaaatgtagtgtttacagttccagtttcattcactcggttgcagttt 21205498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 21155658 - 21155529
Alignment:
Q  18 ttaaatgtatagtatatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagta 117  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||| || |||    
T  21155658 ttaaatgtctagtatttccagtttgtccattgaacatgaaaattcaaattagattaagagatttctaaccatttgtgtgcaatatcgaaagatacatgta 21155559  T
Q  118 aataagtttgattgtgtgattttaggacta 147  Q
    ||||||||||||||| ||| ||||||||||    
T  21155558 aataagtttgattgtatgaatttaggacta 21155529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 21296140 - 21296027
Alignment:
Q  38 gtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtgat 137  Q
    |||||||| | |||||| ||||| || |||| |||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| |||||||||    
T  21296140 gtttgtccgtcgaacataaaaatgcatattagattaagagatttctaatcatttgtgtgccatatcgaaagacgcatgtaaataagtttggttgtgtgat 21296041  T
Q  138 tttaggactataaa 151  Q
    ||||||||||||||    
T  21296040 tttaggactataaa 21296027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 21274711 - 21274599
Alignment:
Q  37 agtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtga 136  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| |||||||||||| |||| || || |||||||||||||||||| |||    
T  21274711 agtttgtccattgagcatgaaaattcaaattagattaagagatttctaaccatgtgtgtgcaatatcgaaatatacatgtaaataagtttgattgtttga 21274612  T
Q  137 ttttaggactata 149  Q
    ||||| |||||||    
T  21274611 ttttaagactata 21274599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21140715 - 21140588
Alignment:
Q  18 ttaaatgtatagtatatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagta 117  Q
    |||||||| | |||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||||| ||| ||||| ||||||  |||| | || |||    
T  21140715 ttaaatgtcttgtatttccggtttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgta 21140616  T
Q  118 aataagtttgattgtgtgattttaggac 145  Q
    ||||||||||||| ||||||||||||||    
T  21140615 aataagtttgattatgtgattttaggac 21140588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 21213091 - 21212980
Alignment:
Q  38 gtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtgat 137  Q
    |||||||  |||||||| ||||| || | || ||||||| ||||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  21213091 gtttgtcggttgaacatcaaaattcatagtagattaagacatttccaatcatctgtgtgcaatatcgaaagatgcatgtaaataagtttgattgtgtgat 21212992  T
Q  138 tttaggactata 149  Q
    |||| |||||||    
T  21212991 tttatgactata 21212980  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 21175010 - 21174902
Alignment:
Q  37 agtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtga 136  Q
    |||||||||||||||||||||||| |||||||     |||||| || || ||| |||||||||||| ||||||| || |||||||||||||||||||| |    
T  21175010 agtttgtccattgaacatgaaaattcaaatta----gagagatatcgaaccatctgtgtgcaatatcgaaagatacatgtaaataagtttgattgtgtaa 21174915  T
Q  137 ttttaggactata 149  Q
    |||||||||||||    
T  21174914 ttttaggactata 21174902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 21209511 - 21209387
Alignment:
Q  18 ttaaatgtatagtatatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagta 117  Q
    |||||||| | |||| ||| ||||||||||||||||||||||| | |||||  |||||||||||||||  || |||||  ||||| ||||| | || |||    
T  21209511 ttaaatgtcttgtatttccggtttgtccattgaacatgaaaattctaattaggttaagagatttctaactatctgtgt--aatatcgaaaggtacatgta 21209414  T
Q  118 aataagtttgattgtgtgattttaggact 146  Q
    ||||||||||||  | |||||||||||||    
T  21209413 aataagtttgat--tatgattttaggact 21209387  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 21305776 - 21305712
Alignment:
Q  168 aatcacaaatgcaacaataaccaacttcccttttccgatgcatacctttgacattaaggttcacc 232  Q
    |||||||||||||||||  ||||||||||| |||| |||||| ||||| ||||||||||||||||    
T  21305776 aatcacaaatgcaacaagtaccaacttcccatttctgatgcacaccttagacattaaggttcacc 21305712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 21189575 - 21189521
Alignment:
Q  95 tgcaatattgaaagatgcaagtaaataagtttgattgtgtgattttaggactata 149  Q
    |||||||| | ||||| || |||||||||||||||||||||||||||||| ||||    
T  21189575 tgcaatatcggaagatacatgtaaataagtttgattgtgtgattttaggaatata 21189521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 21233936 - 21233878
Alignment:
Q  91 tgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtgattttaggactata 149  Q
    |||||||||||| ||||| | ||  ||||||||||||||||||| ||||||||||||||    
T  21233936 tgtgtgcaatatcgaaaggtacatataaataagtttgattgtgtcattttaggactata 21233878  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 21244224 - 21244271
Alignment:
Q  38 gtttgtccattgaacatgaaaatacaaattacattaagagatttctaa 85  Q
    |||||| |||||||||||||||| |||| || ||||||||||||||||    
T  21244224 gtttgttcattgaacatgaaaatgcaaactagattaagagatttctaa 21244271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 21187633 - 21187592
Alignment:
Q  44 ccattgaacatgaaaatacaaattacattaagagatttctaa 85  Q
    ||||||||||||||||| |||| || ||||||||||||||||    
T  21187633 ccattgaacatgaaaatgcaaactagattaagagatttctaa 21187592  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 21187005 - 21186965
Alignment:
Q  45 cattgaacatgaaaatacaaattacattaagagatttctaa 85  Q
    |||||||||||||||| |||| || ||||||||||||||||    
T  21187005 cattgaacatgaaaatgcaaactagattaagagatttctaa 21186965  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 21244286 - 21244318
Alignment:
Q  115 gtaaataagtttgattgtgtgattttaggacta 147  Q
    |||||| ||||||||||||||||||||||||||    
T  21244286 gtaaattagtttgattgtgtgattttaggacta 21244318  T

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Target: scaffold1787 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 1238 - 1359
Alignment:
Q  152 gttcttaacctttatcaatcacaaatgcaacaataaccaacttcccttttccgatgcatacctttgacattaaggttcaccatttcattgctgcatttat 251  Q
    |||||||||  || |||||||||||||||||||||||||||||||| |||| |||||| | ||| |||||||||||||||| ||| ||||| |||||| |    
T  1238 gttcttaacaattgtcaatcacaaatgcaacaataaccaacttcccatttctgatgcacagcttggacattaaggttcacccttttattgccgcatttgt 1337  T
Q  252 gaacaaagtgtggggatccacc 273  Q
    || || ||||||||||| ||||    
T  1338 gatcagagtgtggggattcacc 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 1072 - 1192
Alignment:
Q  29 gtatatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttga 128  Q
    |||| ||| ||||||||||||||||||||||| |||| || || || |||||||||| ||| || ||||||||| | ||||| || ||||||||||||||    
T  1072 gtatttccggtttgtccattgaacatgaaaatgcaaactatataaatagatttctaaccatctgggtgcaatatgggaagatacatgtaaataagtttga 1171  T
Q  129 ttgtgtgattttaggactata 149  Q
    ||||||| |||||||||||||    
T  1172 ttgtgtggttttaggactata 1192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 23070 - 23185
Alignment:
Q  34 tccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtg 133  Q
    ||||||||||||||||||||||||||   ||| ||  ||||||||||||||  ||| ||||||||||||  |||||| || |||||||||||||||||||    
T  23070 tccagtttgtccattgaacatgaaaacttaaactagtttaagagatttctacccatctgtgtgcaatatcaaaagatacatgtaaataagtttgattgtg 23169  T
Q  134 tgattttaggactata 149  Q
    |||||||| |||||||    
T  23170 tgattttaagactata 23185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 36171 - 36250
Alignment:
Q  70 attaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtgattttaggactata 149  Q
    |||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||| ||||    
T  36171 attaagagatttctaaccatttgtgtgcaatattaaaagatacatgtaaataagtttgattatgtgattttaggattata 36250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 55729 - 55793
Alignment:
Q  80 ttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgattgtgtgattttagga 144  Q
    |||||| ||| |||||||| | ||||||||| |||||||||||||||||| |||||||| |||||    
T  55729 ttctaaccatatgtgtgcacttttgaaagatacaagtaaataagtttgatcgtgtgattatagga 55793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 2323272 - 2323388
Alignment:
Q  31 atatccagtttgtccattgaacatgaaaatacaaattacattaagagatttctaatcatttgtgtgcaatattgaaagatgcaagtaaataagtttgatt 130  Q
    ||||||| |||||||||||||||||||||| ||||||| || | ||||||||||| ||| ||| | | ||||  ||||||  | ||||||||| ||| ||    
T  2323272 atatccaatttgtccattgaacatgaaaatgcaaattagatgatgagatttctaagcatctgtataccatatcaaaagatatatgtaaataag-ttggtt 2323370  T
Q  131 gtgtgattttaggactat 148  Q
    |||| |||||| ||||||    
T  2323371 gtgtaattttaagactat 2323388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 47880004 - 47879942
Alignment:
Q  302 tggctgaaacttaactgaaacaacttattgaaaatgtagtgtttacagttccagtttcattca 364  Q
    ||||||||||| ||||||||| ||  ||   ||||||||||||||||||||||||||| ||||    
T  47880004 tggctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttca 47879942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 44728396 - 44728331
Alignment:
Q  299 aaatggctgaaacttaactgaaacaacttattgaaaatgtagtgtttacagttccagtttcattca 364  Q
    |||||||||||||| |||||||||||| |||   ||||||||||||||   |||||||||| ||||    
T  44728396 aaatggctgaaactgaactgaaacaacctataagaaatgtagtgtttattattccagtttcgttca 44728331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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