View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_high_9 (Length: 238)
Name: NF10322_high_9
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_high_9 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 31110678 - 31110497
Alignment:
| Q |
42 |
gttataaaatagtcaaattttgggagacaacaacaaattgaatttgggtcccagttgttatatgtattaatatctgatatacacccttattttataggta |
141 |
Q |
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| T |
31110678 |
gttataaaatagtcaaattttgggggacaacaacaatttgaatttgggtcctagttgttatatgtattaatatctgatatacacccttattttataggta |
31110579 |
T |
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| Q |
142 |
aacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgcctgaagagaaaaccgaagtttc |
223 |
Q |
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| T |
31110578 |
aacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgcctgaagagaaaaccgaagtttc |
31110497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 31080714 - 31080610
Alignment:
| Q |
118 |
atatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgcctgaagagaaaaccga |
217 |
Q |
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|||||||| |||||||||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||| || ||||||||| ||||||||||||| | |
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| T |
31080714 |
atatacactcttattttataggtaaaccttcgtgcatgttttaacacatactctatgtgggacttgttgtggtatactacatgtttgaagagaaaaccaa |
31080615 |
T |
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| Q |
218 |
agttt |
222 |
Q |
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||||| |
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| T |
31080614 |
agttt |
31080610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 31056851 - 31056746
Alignment:
| Q |
108 |
ttaatatctgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgcctgaag |
207 |
Q |
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||||||| ||||||||| ||||||||||| |||||| ||| | | |||||||||||||||||||||||||| ||||||| || |||||||||| || || |
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| T |
31056851 |
ttaatatttgatatacaatcttattttatatgtaaaccttcctgcctgttttaacacatactcgatgtgggacttgttgtggtatactacatgcttgtag |
31056752 |
T |
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| Q |
208 |
agaaaa |
213 |
Q |
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|||||| |
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| T |
31056751 |
agaaaa |
31056746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 31035590 - 31035483
Alignment:
| Q |
116 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgcctgaagagaaaacc |
215 |
Q |
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|||||||||| ||| ||||||||| |||| ||||| |||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||| |
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| T |
31035590 |
tgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgttgtggtatactacatgtttgaagagaaaacc |
31035491 |
T |
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| Q |
216 |
gaagtttc |
223 |
Q |
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||||||| |
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| T |
31035490 |
taagtttc |
31035483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 31046020 - 31045951
Alignment:
| Q |
116 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgtt |
185 |
Q |
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| T |
31046020 |
tgatatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgatgtgggacttgtt |
31045951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 31027179 - 31027095
Alignment:
| Q |
116 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatg |
200 |
Q |
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| T |
31027179 |
tgatatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgatgtgagactagttgtggtatactacatg |
31027095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31110905 - 31110860
Alignment:
| Q |
1 |
cacttgtaaagcccaacaacaaacaaccacaacaatgacatgttataaaa |
50 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31110905 |
cacttgtaaagcccaacaacaa----ccacaacaatgacatgttataaaa |
31110860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 170710 - 170779
Alignment:
| Q |
116 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgtt |
185 |
Q |
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||||| |||| |||||||||||||||||| ||| | ||||||||||| ||||||||||||||| ||||| |
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| T |
170710 |
tgatacacactcttattttataggtaaaccttcttctatgttttaacatatactcgatgtgggacttgtt |
170779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 4985 - 5091
Alignment:
| Q |
116 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgt-ttactacatgcctgaagagaaaac |
214 |
Q |
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|||||||||| |||||||||||| ||||| | | | ||||||||| |||||| |||||||| ||||||| || ||||| ||| ||| |||||||||| |
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| T |
4985 |
tgatatacactcttattttatagataaacctcagtgcctgttttaacgtatactctatgtgggacttgttgtggtattactgcataccttaagagaaaac |
5084 |
T |
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| Q |
215 |
cgaagtt |
221 |
Q |
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| ||||| |
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| T |
5085 |
caaagtt |
5091 |
T |
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