View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_low_1 (Length: 458)
Name: NF10322_low_1
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_low_1 |
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| [»] scaffold0466 (3 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 25359288 - 25358998
Alignment:
| Q |
5 |
ttttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359288 |
ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
25359189 |
T |
|
| Q |
101 |
taattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcatagagtggaagaa |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||| |
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| T |
25359188 |
taattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaagatgcatagagtggaagaa |
25359089 |
T |
|
| Q |
201 |
attctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttgacgacaagagatagaaattcaactt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
25359088 |
attctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaactt |
25358998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 25399321 - 25399050
Alignment:
| Q |
5 |
ttttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399321 |
ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
25399222 |
T |
|
| Q |
101 |
taattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcatagagtggaagaa |
200 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||| |
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| T |
25399221 |
taattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaagatgcatagagtggaagaa |
25399122 |
T |
|
| Q |
201 |
attctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttgacgaca |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25399121 |
attctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaacttgacgaca |
25399050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 90 - 291
Target Start/End: Complemental strand, 25618243 - 25618042
Alignment:
| Q |
90 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
189 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
|
| Q |
190 |
gagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttgacgacaagagatagaaattcaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
25618143 |
gagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaac |
25618044 |
T |
|
| Q |
290 |
tt |
291 |
Q |
| |
|
|| |
|
|
| T |
25618043 |
tt |
25618042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 90 - 291
Target Start/End: Complemental strand, 25650968 - 25650769
Alignment:
| Q |
90 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
189 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |
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| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
|
| Q |
190 |
gagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttgacgacaagagatagaaattcaac |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
25650868 |
gagtggaagaaattctagaatatcacacttgagggtcgcatatgttcatattttggacgataagaaagccaaacttgacgaca--agctagaaattcaac |
25650771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
90 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaaga |
183 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
5 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
93 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
2 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
93 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 25617900 - 25617849
Alignment:
| Q |
304 |
cattattatgtctctcttcaaattatgcatacacacaacttagaagcagctac |
356 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25617900 |
cattattatgtctctcttcaaattatgcatacaca-aacttagaagcagctac |
25617849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 25391997 - 25391951
Alignment:
| Q |
309 |
ttatgtctctcttcaaattatgcatacacacaacttagaagcagctac |
356 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25391997 |
ttatgtctcttttcaaattatgcatacaca-aacttagaagcagctac |
25391951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 25650544 - 25650504
Alignment:
| Q |
315 |
ctctcttcaaattatgcatacacacaacttagaagcagctac |
356 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25650544 |
ctctcttcaaattatgcatacaca-aacttagaagcagctac |
25650504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 6221 - 6420
Alignment:
| Q |
90 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
189 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
190 |
gagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttgacgacaagagatagaaattcaac |
289 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
6321 |
gagtggaagaaattctagattatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaac |
6420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 7752 - 7807
Alignment:
| Q |
300 |
tccacattattatgtctctcttcaaattatgcatacacacaacttagaagcagctac |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7752 |
tccacattattatgtctctcttcaaattatgcatacaca-aacttagaagcagctac |
7807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
15 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
93 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 342 - 426
Alignment:
| Q |
5 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
342 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggatatggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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