View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_low_13 (Length: 239)
Name: NF10322_low_13
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 19423507 - 19423717
Alignment:
| Q |
12 |
agatgaactttgatagtattatctggaaaagggttgtcaagatcaagtggatcaaaatcccaagttccaaatccaattatcgtgtcacggcatatagatt |
111 |
Q |
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| T |
19423507 |
agatgaactttgattgtattatctgaaaaagggttgtcaagatcaagtggatcaaaatcccaagttccaaatccaattatcgtgtcacggcatatagatt |
19423606 |
T |
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| Q |
112 |
catgctcaccttgttgtttcacttgtgactgcattaaattaagtagtcgttcgatcagtataaagatattttacactgtcgatcaatcataatcgtaaga |
211 |
Q |
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| T |
19423607 |
catgctcaccttgttgtttcacttgtgactgcattaaattaagtagtcgttcgatcagtataaagatattttacactgttgatcaatcataatcgtaaga |
19423706 |
T |
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| Q |
212 |
ttatatatata |
222 |
Q |
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| T |
19423707 |
ttatatatata |
19423717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 7601482 - 7601440
Alignment:
| Q |
165 |
atcagtataaagatattttacactgtcgatcaatcataatcgt |
207 |
Q |
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| T |
7601482 |
atcagtgtaaagattttttacactgtcaatcaatcataatcgt |
7601440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 36886000 - 36886042
Alignment:
| Q |
165 |
atcagtataaagatattttacactgtcgatcaatcataatcgt |
207 |
Q |
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| T |
36886000 |
atcagtgtaaagatattttacactatcaatcaatcataatcgt |
36886042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 16962155 - 16962191
Alignment:
| Q |
166 |
tcagtataaagatattttacactgtcgatcaatcata |
202 |
Q |
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||||||||||| | ||||||||||||||||||||||| |
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| T |
16962155 |
tcagtataaagtttttttacactgtcgatcaatcata |
16962191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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