View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_low_2 (Length: 435)
Name: NF10322_low_2
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 43681626 - 43682039
Alignment:
| Q |
14 |
atcattaccaatatcaattagtccaagtgacaagagctagaatcttcccttagacaatgccatgtgaatgagcaaaaaatgttgttggaagagccgtgct |
113 |
Q |
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| T |
43681626 |
atcattaccaatatcaattagtccaagtgacaagagctagaatcttcccttagacaatgccatgtgaatgagcaaaaaatgttgttggaagagccgtgct |
43681725 |
T |
|
| Q |
114 |
attatgttttggattgatatattttgtaatccctttgtttgaattaatatcttatactcctttatttcaaatatgtacaagaaaaatctattatttttgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43681726 |
attatgttttggattgatatattttgtaatccctttgtttgaattaatatcttatactcctttatttcaaatatttacaagaaaaatctattatttttgg |
43681825 |
T |
|
| Q |
214 |
ataaggtccggacagaaaacaaagtatacatacatatattggagacatatgttcaatttaaaagagccttatccatatgaacgtagtattttgcctgcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43681826 |
ataaggtccggacagaaaacaaagtatacatacatatattggagacatatgttcaatttaaaagagccttatccatatgaacgtagtattttgcctgcaa |
43681925 |
T |
|
| Q |
314 |
aatggtggtacattttagttgcatgatcttaaaaattgatatgtttcttagactagtatattcatgagttcatttgggaaattcatacgaataatttttc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43681926 |
aatggtggtacattttagttgcatgatcttaaaaattgatatttttcttagactagtatattcatgagttcatttgggaaattcatacgaataatttttc |
43682025 |
T |
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| Q |
414 |
tttttaaccctttg |
427 |
Q |
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|||||||||||||| |
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| T |
43682026 |
tttttaaccctttg |
43682039 |
T |
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