View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_low_3 (Length: 405)
Name: NF10322_low_3
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_low_3 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0202 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 2559 - 2494
Alignment:
| Q |
177 |
tgttatgactgtgatgaacctctaatgttcttttctcaagccattgttaagcaagttgagcctaatg |
243 |
Q |
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| T |
2559 |
tgttatgactatgatgtacctctcatgttcttt-ctcaagccattgttaagcaagttgagcctaatg |
2494 |
T |
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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 31093912 - 31093850
Alignment:
| Q |
180 |
tatgactgtgatgaacctctaatgttcttttctcaagccattgttaagcaagttgagcctaatg |
243 |
Q |
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| T |
31093912 |
tatgactatgatgtacctctcatgttcttt-ctcaagccattgttaagcaagttgagcctaatg |
31093850 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 31056790 - 31056724
Alignment:
| Q |
63 |
tcgatgtgggacttgttgtaatatactacatgcctgaagagaaaaaccaaagtttcaagtctaaact |
129 |
Q |
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| T |
31056790 |
tcgatgtgggacttgttgtggtatactacatgcttgtagagaaaaatcaaagtttcgagtctaaact |
31056724 |
T |
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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 31110551 - 31110486
Alignment:
| Q |
63 |
tcgatgtgggacttgttgtaatatactacatgcctgaagagaaaaaccaaagtttcaagtctaaact |
129 |
Q |
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| T |
31110551 |
tcgatgtgggatttgttgttgtttactacatgcctgaagag-aaaaccgaagtttcaagtctaaact |
31110486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 31080660 - 31080598
Alignment:
| Q |
66 |
atgtgggacttgttgtaatatactacatgcctgaagagaaaaaccaaagtttcaagtctaaact |
129 |
Q |
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| T |
31080660 |
atgtgggacttgttgtggtatactacatgtttgaagag-aaaaccaaagttttaagtctaaact |
31080598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 31096897 - 31096936
Alignment:
| Q |
22 |
ctgatatcatcttccttgcgtggagcacagtacacgccta |
61 |
Q |
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| T |
31096897 |
ctgatatcatcttccttgcttggaacacagtacacgccta |
31096936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 31035537 - 31035473
Alignment:
| Q |
63 |
tcgatgtgggacttgttgtaatatactacatgcctgaagagaaaaaccaaagtttcaagtctaaac |
128 |
Q |
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| T |
31035537 |
tcgatgtggaacttgttgtggtatactacatgtttgaagag-aaaacctaagtttcaagtttaaac |
31035473 |
T |
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