View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10322_low_6 (Length: 334)
Name: NF10322_low_6
Description: NF10322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10322_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 70 - 300
Target Start/End: Original strand, 40651543 - 40651773
Alignment:
| Q |
70 |
actacacaaattctaaaatactagatttggttggttaacaagtgctcctcttgttgccatacaaagtcaatgacctctctgtgcaacctcgctgtagtta |
169 |
Q |
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| T |
40651543 |
actacacaaattctaaaatactagatttggttggttaacaagtgctcctcttgttgccatacaatgccaatgacctctctgtgcaacctcgcggtagtta |
40651642 |
T |
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| Q |
170 |
tttggcctaagtttgtaagtaccacattgacgaacaattcggacattcatgtaggtgtccttttctttatgttcaaatggtccaagccgtacaattgagt |
269 |
Q |
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| T |
40651643 |
tttggcctaagtttgtaagtaccacattgacgaacaattcggacattcatgcaggtgtccttttctttatgttcaaatggtccaagccgtacaattgagt |
40651742 |
T |
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| Q |
270 |
ttcgtaagatggttcaggtaagatttcaatg |
300 |
Q |
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| T |
40651743 |
ttcgtaagatggttcaggtaagatttcaatg |
40651773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 40666610 - 40666656
Alignment:
| Q |
243 |
caaatggtccaagccgtacaattgagtttcgtaagatggttcaggta |
289 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40666610 |
caaatggtccaaaccgtacaattgagtttcgtaagatggttcaggta |
40666656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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