View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10322_low_7 (Length: 273)

Name: NF10322_low_7

Description: NF10322

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10322_low_7

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 132; E-Value: 1e-68

Query Start/End: Original strand, 19 - 181

Target Start/End: Original strand, 31118598 - 31118761

Alignment:

Q	19	tttttggtcctaaggatccatccaccacttcatcttcttccaacagcatctttagctccatttttccacctccatccactgtatgcatgatttcctctcc	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31118598	tttttggtcctaaggatccatccaccacttcatcttcttccaacagcatctttagctccatttttccacctccatccactgtatgcatgatttcctctcc	31118697	T

Q	119	cttatat-aannnnnnnncatgcatggatatattttgctcatttatgcatgtcccttcaagact	181	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31118698	cttatataaattttttttcatgcatggatatattttgctcatttatgcatgtcccttcaagact	31118761	T

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Target: chr3; HSP #2

Raw Score: 51; E-Value: 3e-20

Query Start/End: Original strand, 210 - 264

Target Start/End: Original strand, 31118790 - 31118844

Alignment:

Q	210	cagattgtgtattagttttagaaatatgtcatagatattgtttctaagttcttct	264	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31118790	cagattgtgtattagttttggaaatatgtcatagatattgtttctaagttcttct	31118844	T

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