View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_high_10 (Length: 216)
Name: NF10323_high_10
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37331380 - 37331233
Alignment:
| Q |
1 |
tcaggaacgaaccttgtttttaaatagtcaaaattaccaacaaaataaaatattaaaaacgtgtttgtaattttgatacatttttaaagtttaaaaagag |
100 |
Q |
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| T |
37331380 |
tcaggaacgaaccttgtttttaaatagtcaaaattaccaacaaaataaaatattaaaaacgtgtttgtaattttgatacatttttaaagtttaaaaagag |
37331281 |
T |
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| Q |
101 |
atgtattatttaccttacaagtcaattttaaaatgttttgaaaggatt |
148 |
Q |
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| T |
37331280 |
atgtattatttaccttacaagtcaattttaaaatgttttgaaaggatt |
37331233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 37331216 - 37331152
Alignment:
| Q |
137 |
tttgaaaggattaggtagacttaatatcaaaatctaacatgatattaaagcttggtgaaccattt |
201 |
Q |
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| T |
37331216 |
tttgaaaggattagttagacttaatatcaaaatctaacatgatattaaagcttggtgaaccattt |
37331152 |
T |
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