View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_high_5 (Length: 349)
Name: NF10323_high_5
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 52987476 - 52987808
Alignment:
| Q |
16 |
atgaaggttaaaagtgtgattaggtctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaannnnnnnnnnnnnngacatcctta |
115 |
Q |
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| T |
52987476 |
atgaaggttaaaagtgtgattaggcttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttatttttttgacatcctta |
52987575 |
T |
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| Q |
116 |
gctccaatctnnnnnnnnnnnnnnn-ggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgt |
214 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987576 |
gctccaatctaaaaaaaaaaaaaaaaggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgt |
52987675 |
T |
|
| Q |
215 |
atcaagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagtt--------------ttccatatggtaaacattaatgtgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
52987676 |
atcaagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagttttccatatttgttattccatatggtaaacattaatttgc |
52987775 |
T |
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| Q |
301 |
ataaacaagattgctaactttgttgcttatgct |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52987776 |
ataaacaagattgctaactttgttgcttatgct |
52987808 |
T |
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