View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_low_1 (Length: 592)
Name: NF10323_low_1
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Complemental strand, 39093485 - 39092914
Alignment:
| Q |
13 |
caaaggccccttcggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagtaat |
112 |
Q |
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| T |
39093485 |
caaaggccccttgggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagtaat |
39093386 |
T |
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| Q |
113 |
tttctcaacatttttatacacg---------gtttatcataatggcaatattttttaagataatgacgtgcataggctaattattatagtattcacacgg |
203 |
Q |
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| T |
39093385 |
tttctcaacatttttatacacgagatacacggtttatcataatggcaatattttttaagataatgacgtgcataggctaattattatagtattcacacgg |
39093286 |
T |
|
| Q |
204 |
gaaccatgggtgtattattaattattaaccaagagaaaaagaatacacctataagaatatatattaatctaagatagttggttcctatctataggagctg |
303 |
Q |
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| T |
39093285 |
gaaccatgggtgtattattaattattaaccaagagaaaaagaatacacctataagaatatatattaatctaagatagttggttcctatctataggagctg |
39093186 |
T |
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| Q |
304 |
gtgtaggtgcacaattgatactgagataataaaatattgtagctatgaggtttctatcacagagttgcataaagtattaaggtcgtgagaatcttttgtt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093185 |
gtgtaggtgcacaattgatactgagataataaaatattgtagctatgaggtttctat--cagagttgcataaagtattaaggtcgtgagaatcttttgtt |
39093088 |
T |
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| Q |
404 |
gttttattgttgctttaggttctcagtcttaggtgtgcttcaagttcccatcggtttttcttggtttgtcttggaggcatttaacacgtattctattaag |
503 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39093087 |
gttttcttgttgctttaggttctcagtcttaggtgtgcttcaagttcccatcggtttttcttggtttgtcttggaggcatttaacatgtattctattaag |
39092988 |
T |
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| Q |
504 |
agttttatttaagtctctttactgttgttttatgtgtctacaaggggaattattcttcacaaactttgattttg |
577 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39092987 |
agttttatttaagtctctttattgttgttttaggtgtctacaaggggaattattcttcacaaactttgattttg |
39092914 |
T |
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