View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10323_low_12 (Length: 228)

Name: NF10323_low_12

Description: NF10323

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10323_low_12

[»] chr5 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 146; E-Value: 5e-77

Query Start/End: Original strand, 68 - 217

Target Start/End: Original strand, 37331438 - 37331587

Alignment:

Q	68	gaagaggaacatgcgtagatgtgtttgtaattttgattgattcattcagatattatagtaacattgtcttacacatttaggaccaggacaggaccaattg	167	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37331438	gaagaggaacatgcgtagatgtgtttgtaattttgattgattcattcagatattatagtaacattgtcttacacattttggaccaggacaggaccaattg	37331537	T

Q	168	atgatgttttatccttctcgtttcttaagaaattgagatgatctctgctt	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37331538	atgatgttttatccttctcgtttcttaagaaattgagatgatctctgctt	37331587	T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 110 - 148

Target Start/End: Complemental strand, 18199310 - 18199272

Alignment:

Q	110	cattcagatattatagtaacattgtcttacacatttagg	148	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18199310	cattaagatattatagtgacattgtcttacacatttagg	18199272	T

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