View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_low_15 (Length: 201)
Name: NF10323_low_15
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 4243676 - 4243853
Alignment:
| Q |
18 |
aggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattgttggaagaatattggcttaca |
117 |
Q |
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| T |
4243676 |
aggaatcatgtgttatgtttgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattgttggaagaatattggcttaca |
4243775 |
T |
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| Q |
118 |
tgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgcacaggttctgctc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
4243776 |
tgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgcacagattatgctc |
4243853 |
T |
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Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 33495900 - 33495732
Alignment:
| Q |
18 |
aggaatcatgtgttatgtgtgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattgttggaagaatattggcttaca |
117 |
Q |
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|||||||||| ||||||||||||| ||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
33495900 |
aggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctcttctttgtttgtgcaaaagccatggattgttggaagaatattggcttata |
33495801 |
T |
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| Q |
118 |
tgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgcacag |
186 |
Q |
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|| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33495800 |
tgatgtgttaagtgagcttctccctcttgctaacaactttactacattgttgtttgactttacgcacag |
33495732 |
T |
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