View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_low_4 (Length: 486)
Name: NF10323_low_4
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 42 - 471
Target Start/End: Complemental strand, 47186141 - 47185712
Alignment:
| Q |
42 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
141 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
|
| Q |
142 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47185942 |
T |
|
| Q |
242 |
ttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgcttccaatagaagtacctt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47185941 |
ttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgcttccaatagaagtaccct |
47185842 |
T |
|
| Q |
342 |
tctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatgagtaaagtgaagcatcattgtgaaat |
441 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185841 |
tctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatgagtaaagtgaagcatcattgtgaaat |
47185742 |
T |
|
| Q |
442 |
cccagagtgctgaacaatactggagcatag |
471 |
Q |
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|||| |||| |||||||||||||||||||| |
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| T |
47185741 |
cccaaagtgttgaacaatactggagcatag |
47185712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 26 - 471
Target Start/End: Complemental strand, 47198696 - 47198251
Alignment:
| Q |
26 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
|
| Q |
126 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
47198497 |
T |
|
| Q |
226 |
attgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgctt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
47198496 |
attgcatagcctttgcttaagctatctgagtgatcttggagtttagccccaagcactatgccaattacaacttgggacacaaacatttgcacacatgctt |
47198397 |
T |
|
| Q |
326 |
ccaatagaagtacctttctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatgagtaaagtga |
425 |
Q |
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|||||| || ||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198396 |
ccaataagagcacccttctcccagctttgtccacaaaatatacagacactaaagtgcataggacattcacacctcctgtgatcactgatgagtaaagtga |
47198297 |
T |
|
| Q |
426 |
agcatcattgtgaaatcccagagtgctgaacaatactggagcatag |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198296 |
agcatcattgtgaaatcccagagtgctgaacaatactggagcatag |
47198251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
106 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
188 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
58 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
157 |
Q |
| |
|
||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
|
| Q |
158 |
accaaccaagtggaccccatgaccatgcaaa |
188 |
Q |
| |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
136 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
235 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
236 |
ctttg |
240 |
Q |
| |
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||||| |
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|
| T |
41414149 |
ctttg |
41414153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
109 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
188 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
143 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
188 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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