View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10323_low_9 (Length: 250)
Name: NF10323_low_9
Description: NF10323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10323_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 6955711 - 6955939
Alignment:
| Q |
17 |
aaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagactttgtcgatccataaaatggatttagaaatactttcagaaattgagcg |
116 |
Q |
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| T |
6955711 |
aaatatccccttgtgaaaaacgaagttcaagatttggccaaacagaagagactttgtcgatccataaaatggatttagaaatactttcagaaattgagcg |
6955810 |
T |
|
| Q |
117 |
ttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagacattcgtagatgaaggacattgaaaagtgccgtc------tcgaagc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
6955811 |
ttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagacattcgtagatgaaggacattgaaaactgccgtcgataaatcgaagc |
6955910 |
T |
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| Q |
211 |
ttgttcttagaaattagggctaccttcat |
239 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6955911 |
ttgttcttagaaattagggctaccttcat |
6955939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 22454897 - 22454767
Alignment:
| Q |
17 |
aaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagactttgtcgatccataaaatggatttagaaatactttcagaaattgagcg |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22454897 |
aaatatccccttgtgaaaaacgaagttcaagatttgtccaaacagaggaggctttgtcgatccataaaatggatttagaaatactttcaaaaattgagca |
22454798 |
T |
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| Q |
117 |
ttgaagccatgagagaaccatgttgttgcag |
147 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22454797 |
ttgaagccatgagagaaccatgttgttgcag |
22454767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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