View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10324_high_1 (Length: 371)
Name: NF10324_high_1
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10324_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 20106413 - 20106069
Alignment:
| Q |
16 |
ctttttgttcctcttctttacatgttcccttcgatcatcatttccattctacaaagacatactcaacacgattcgtcgtagttcgatgtactcagagcag |
115 |
Q |
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| T |
20106413 |
ctttttgttcctcttctttacatgttcccttcgatcatcatttccattctacaaagacatactcaacacgattcgtcgtagttcgatgtactcagagcag |
20106314 |
T |
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| Q |
116 |
tgttcaggagatagaagagaatgtggagttattgggaaactcagtcttgtttcctccattgaaagtggcaaagagagttgtgcttgttagacatggacag |
215 |
Q |
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| T |
20106313 |
tgttcaggagatagaagagaatgtggagttattgggaaactcagtcttgtttcctccattgaaagtggcaaagagagttgtgcttgttagacatggacag |
20106214 |
T |
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| Q |
216 |
agtacatggaatgctgaagggaggattcaaggtagttctgatttttctgttcttactaagaaaggcgagtctcaggctgagacttctagacaaatgcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20106213 |
agtacatggaatgctgaagggaggattcaaggtagttctgatttttctgttcttactaagaaaggcgagtctcaggctgagacttctagacaaatgcttc |
20106114 |
T |
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| Q |
316 |
ttgaagacaacttcgatgcttgtttcgccaggtctgtctattcat |
360 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20106113 |
tcgaagacaacttcgatgcttgtttcgccaggtctgtctattcat |
20106069 |
T |
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