View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10324_high_2 (Length: 357)
Name: NF10324_high_2
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10324_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 4179716 - 4179507
Alignment:
| Q |
132 |
taattactagttttaggttttattgttcttactattaaccgtgtaagtaagtgcttctaaaaagatggcaattagcgtgtaactttcagcctgaagacga |
231 |
Q |
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| T |
4179716 |
taattactagttttaggttttattgttcttactattaaccgtgtaagtaagtgcttctaaaaagatggcaattagcgtgtaactttcagcctgaagacga |
4179617 |
T |
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| Q |
232 |
ggatcccatgattcagtttatcttaccttactttccaccgtaagcatttagattcatatccatcatttatgatttttaaaacnnnnnnncacacctctta |
331 |
Q |
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| T |
4179616 |
ggatcccatgattcagtttatcttatcttactttccaccgtaagcatttagattcatatccatcatttatgatttttaaaacaaaaaaacacacctctta |
4179517 |
T |
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| Q |
332 |
caacctttct |
341 |
Q |
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| T |
4179516 |
caacctttct |
4179507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4179814 - 4179708
Alignment:
| Q |
1 |
aacttacaaaattaaggcaacgcaaaccacatgttggagtataaannnnnnnnngaggtgacaacatgacattttggtataacttacaaagttaaaataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4179814 |
aacttacaaaattaaggcaacgcaaaccacatgttggagtaaaaaaaaattt--gaggtgacaacatgacattttgatataacttacaaagttaaaataa |
4179717 |
T |
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| Q |
101 |
taattacta |
109 |
Q |
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| T |
4179716 |
taattacta |
4179708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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