View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10324_high_3 (Length: 247)
Name: NF10324_high_3
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10324_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 36755448 - 36755219
Alignment:
| Q |
18 |
gaaaataatagaatcgttgttgaaaaattgtcagcgcataagtcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgt |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
36755448 |
gaaaataatagaatcgttgttgaaaaattgccagcgcataagtcttccttgagaagttttgaatagatttgaaagctttgcttctaatggatgactatgt |
36755349 |
T |
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| Q |
118 |
tgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttttgcacgtggtcagaagaagacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36755348 |
tgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttgcctttgaaaagctttgttttgcacgtggtcagaagaagacaa |
36755249 |
T |
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| Q |
218 |
acaatattgcagaacttgaaaagcgacatt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36755248 |
acaatattgcagaacttgaaaagcgacatt |
36755219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 10649748 - 10649623
Alignment:
| Q |
60 |
tcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggtttcttttgcttcttttggaataatc |
159 |
Q |
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|||||||||||||| ||| | ||| ||| |||||| ||| ||| |||||| | | ||||||||| ||| |||| || ||||||||||||||||| || |
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| T |
10649748 |
tcttccttgagaagctttaattaggtttaaaagctttgcctctgatggataattttgttgaataataccagagagatcatttgcttcttttggaatgatg |
10649649 |
T |
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| Q |
160 |
tgttgcattctatttggttttgaaaa |
185 |
Q |
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| T |
10649648 |
cattgcattctctttgcctttgaaaa |
10649623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 18114692 - 18114796
Alignment:
| Q |
116 |
gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttttgcacgtggtcagaagaagac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18114692 |
gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttgcctttgaaaagctttgttttgcacgtggtcagaagaagac |
18114791 |
T |
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| Q |
216 |
aaaca |
220 |
Q |
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||||| |
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| T |
18114792 |
aaaca |
18114796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 33546133 - 33546345
Alignment:
| Q |
37 |
ttgaaaaattgtcagcgcataagtcttccttgagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggttt |
136 |
Q |
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||||| || ||||| | ||||| |||||||||||||| ||||| || |||||||| | || |||||||||| | || |||||||||| ||||||||| |
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| T |
33546133 |
ttgaagaagtgtcaacacataaatcttccttgagaagctttgatcaggtttgaaagttttgtctctaatggataattcaattgaatagtaatagaggttt |
33546232 |
T |
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| Q |
137 |
cttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttt-----tgcacgtggtcagaagaagacaaacaatattgcagaa |
231 |
Q |
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| T |
33546233 |
tctatgattcttttggaatgatatgttgtattctctatgcatttgaaaaactttgtttgtttctgcacatggtcagaagaagacaaacaatactgcataa |
33546332 |
T |
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| Q |
232 |
cttgaaaagcgac |
244 |
Q |
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|||| || ||||| |
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| T |
33546333 |
cttggaatgcgac |
33546345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 24716089 - 24715975
Alignment:
| Q |
113 |
tctgttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttgttt-----tgcacgtggtcag |
207 |
Q |
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||||||||||| ||||||||| |||||| ||||||||||||| ||| |||| ||||| |||| ||||||| |||||||| ||||||||||||| |
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| T |
24716089 |
tctgttgaatattactagagggatcttttacttcttttggaatgatcagttgaattctctttgactttgaaattctttgtttatttctgcacgtggtcag |
24715990 |
T |
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| Q |
208 |
aagaagacaaacaat |
222 |
Q |
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|||||||| |||||| |
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| T |
24715989 |
aagaagacgaacaat |
24715975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 1185954 - 1185828
Alignment:
| Q |
68 |
gagaagttttgaatagatttgaaagctctgcttctaatggatgactctgttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcat |
167 |
Q |
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|||||||||||| || |||||||||| | | |||||||||| | | |||||||||| |||||||||| ||| ||||||| |||| ||| |||| || |
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| T |
1185954 |
gagaagttttgaccagttttgaaagctttacatctaatggataatttcattgaatagtattagaggtttcattttcttctttgagaatgatccgttgtat |
1185855 |
T |
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| Q |
168 |
tctatttggttttgaaaagctttgttt |
194 |
Q |
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||| |||| ||| |||| |||||||| |
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| T |
1185854 |
tctctttgtctttcaaaaactttgttt |
1185828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 10677300 - 10677391
Alignment:
| Q |
138 |
ttttgcttcttttggaataatctgttgcattctatttggttttgaaaagctttg-----ttttgcacgtggtcagaagaagacaaacaatat |
224 |
Q |
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| T |
10677300 |
ttttgcttcattgggaatgatatgttgcattctattttcctttgaaattctttgtttgtttttgcacgtggtcggaagaagacaaacaatat |
10677391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 15990943 - 15990892
Alignment:
| Q |
116 |
gttgaatagtactagaggtttcttttgcttcttttggaataatctgttgcat |
167 |
Q |
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||||||||| |||||||||||| ||||||||||| | ||| ||||||||||| |
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| T |
15990943 |
gttgaatagaactagaggtttcctttgcttctttcgaaatgatctgttgcat |
15990892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 28458541 - 28458495
Alignment:
| Q |
85 |
tttgaaagctctgcttctaatggatgactctgttgaatagtactaga |
131 |
Q |
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|||||||||||||| |||||||||| | |||||||||| |||||||| |
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| T |
28458541 |
tttgaaagctctgcctctaatggataattctgttgaattgtactaga |
28458495 |
T |
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