View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10324_low_10 (Length: 240)
Name: NF10324_low_10
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10324_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5572934 - 5573158
Alignment:
| Q |
1 |
tcagggctataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagcatttgttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5572934 |
tcagggctataaatgtgacttgttgggtagaattggggaagaaagtaattgtttatgtaatcgttacttccaatattcacataatacaagcatttgttaa |
5573033 |
T |
|
| Q |
101 |
ggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataacc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573034 |
ggtattgttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataacc |
5573133 |
T |
|
| Q |
201 |
ctgtacggacataatgttatttttg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5573134 |
ctgtacggacataatgttatttttg |
5573158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5592671 - 5592895
Alignment:
| Q |
1 |
tcagggctataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagcatttgttaa |
100 |
Q |
| |
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||||||||||||| || |||| | | || |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
5592671 |
tcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaa |
5592770 |
T |
|
| Q |
101 |
ggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataacc |
200 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592771 |
ggtattcttgagctttgtcaattcctccaagttggctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataacc |
5592870 |
T |
|
| Q |
201 |
ctgtacggacataatgttatttttg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5592871 |
ctgtacggacataatgttatttttg |
5592895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5575965 - 5576187
Alignment:
| Q |
1 |
tcagggctataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagcatttgttaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
5575965 |
tcagggctataaatttgacttgttgggtagaattgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaa |
5576064 |
T |
|
| Q |
101 |
ggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataacc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| || ||| || |||| |
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| T |
5576065 |
ggtattcttgagctttgtcaataccttcaagtctgctagcaattcgagaaactataactttgtgattttctaactgtaatcccaaactgataacaaaacc |
5576164 |
T |
|
| Q |
201 |
ctgtacggacataatgttatttt |
223 |
Q |
| |
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||| || || ||||||||||||| |
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| T |
5576165 |
ctgcacagaaataatgttatttt |
5576187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 5586447 - 5586629
Alignment:
| Q |
3 |
agggctataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagcatttgttaagg |
102 |
Q |
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|
||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||| |||||| |
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| T |
5586447 |
agggctataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaagg |
5586546 |
T |
|
| Q |
103 |
tattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaa |
185 |
Q |
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|||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
5586547 |
tattcttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgtaatcccaa |
5586629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 5582176 - 5582317
Alignment:
| Q |
82 |
taatacaagcatttgttaaggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgtaatc |
181 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
5582176 |
taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc |
5582275 |
T |
|
| Q |
182 |
ccaagctaatagcataaccctgtacggacataatgttatttt |
223 |
Q |
| |
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||||||| ||| || |||||||||| ||| |||||||||||| |
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| T |
5582276 |
ccaagctgataacagaaccctgtacagacgtaatgttatttt |
5582317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 12065359 - 12065244
Alignment:
| Q |
52 |
tttatgtaatcattacttccaatattcacataatacaagcatttgttaaggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaa |
151 |
Q |
| |
|
|||||||||| ||||| ||| ||||| |||||| |||| |||||| ||||||||| | || ||| ||||||| |||||||||| ||||||||| ||||| |
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| T |
12065359 |
tttatgtaat-attacatcctatatttacataacacaaacatttggtaaggtattgctcagttttttcaatacttccaagtctggtagcaatttcagaaa |
12065261 |
T |
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| Q |
152 |
ctataactctgtgattt |
168 |
Q |
| |
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|||||| || ||||||| |
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| T |
12065260 |
ctataattcggtgattt |
12065244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 12052563 - 12052456
Alignment:
| Q |
79 |
acataatacaagcatttgttaaggtattcttgagctttgtcaatacctccaagtctgctagcaatttgagaaactataactctgtgatttcttaactgta |
178 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| ||| |||| || ||||||||| ||||||||| ||||||||||| || ||||||| | ||||||| |
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| T |
12052563 |
acataacacaaacatttgttaaggtattgctgagttttttcaagacttccaagtctagtagcaatttcagaaactataagtcggtgatttgtcaactgta |
12052464 |
T |
|
| Q |
179 |
atcccaag |
186 |
Q |
| |
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|| ||||| |
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| T |
12052463 |
ataccaag |
12052456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 5613462 - 5613546
Alignment:
| Q |
8 |
tataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagca |
92 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||| | |||| || ||||||||||| || || ||||||||||||||||||||||| |
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|
| T |
5613462 |
tatagatgcgacttgttgggtaaaattggggcaagtagtagttgtttatgtaatcgttgctgccaatattcacataatacaagca |
5613546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 12072017 - 12071953
Alignment:
| Q |
81 |
ataatacaagcatttgttaaggtattcttgagctttgtcaatacctccaagtctgctagcaattt |
145 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| ||| |||| ||||||||||||| ||||||||| |
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|
| T |
12072017 |
ataacacaagcatttgttaagttattgctgagttttttcaagacctccaagtctgatagcaattt |
12071953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 5557230 - 5557320
Alignment:
| Q |
8 |
tataaatgtgacttgttgggtagaattggggaagaaagtaattttttatgtaatcattacttccaatattcacataatacaagcatttgtt |
98 |
Q |
| |
|
|||| ||||||||||||| ||||| | ||| || ||||||| |||||||| || || ||||| ||||| |||||||||||||| ||||| |
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| T |
5557230 |
tatagatgtgacttgttgagtagagtaagggctgatagtaattgtttatgtagtcgttgcttcctatattaacataatacaagcacttgtt |
5557320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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