View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10324_low_11 (Length: 231)

Name: NF10324_low_11
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10324_low_11
NF10324_low_11
[»] chr2 (5 HSPs)
chr2 (1-231)||(5572678-5572908)
chr2 (1-127)||(5580497-5580623)
chr2 (72-111)||(5575745-5575784)
chr2 (1-35)||(5586088-5586122)
chr2 (1-45)||(5575614-5575658)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5572678 - 5572908
Alignment:
Q  1 tattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattttctcgctcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5572678 tattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattttctcgctcc 5572777  T
Q  101 aatgtcatgtagagcctggaatcaaatggaactaataaaccatcatattaaatatattgaaacaattagtgaaagcaagagtaaaacacaaattctgcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||    
T  5572778 aatgtcatgtagagcctggaatcaaatggaactaataaacaatcatattaaatatattgaatcaattagtgaaagcaagagtaaaacataaattttgagt 5572877  T
Q  201 ggtcatataccagtaaattcaaagataactc 231  Q
    |||||||||||||||||||||||||||||||    
T  5572878 ggtcatataccagtaaattcaaagataactc 5572908  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5580497 - 5580623
Alignment:
Q  1 tattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattttctcgctcc 100  Q
    ||||||||||||||||||||||||||||||||||| || | |||||| ||||||| |||| ||||||| ||||||||||||||||||||||||| |||||    
T  5580497 tattattgaaatgttccactagagatttaagcttggaaattaaaagtaacggagtgctgcctgaaagttccaacccaactaacacatattttcttgctcc 5580596  T
Q  101 aatgtcatgtagagcctggaatcaaat 127  Q
    |||||||||||||||||||||| ||||    
T  5580597 aatgtcatgtagagcctggaataaaat 5580623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 5575745 - 5575784
Alignment:
Q  72 aacccaactaacacatattttctcgctccaatgtcatgta 111  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  5575745 aaccctactaacacatattttctagctccaatgtcatgta 5575784  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5586088 - 5586122
Alignment:
Q  1 tattattgaaatgttccactagagatttaagcttg 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  5586088 tattattgaaatgatccactagagatttaagcttg 5586122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5575614 - 5575658
Alignment:
Q  1 tattattgaaatgttccactagagatttaagcttgtaattgaaaa 45  Q
    ||||||||||||| ||||||| | ||||||||||| |||||||||    
T  5575614 tattattgaaatgatccactaaaaatttaagcttgaaattgaaaa 5575658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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