View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10324_low_2 (Length: 442)

Name: NF10324_low_2
Description: NF10324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10324_low_2
NF10324_low_2
[»] chr8 (15 HSPs)
chr8 (12-406)||(13024743-13025137)
chr8 (38-159)||(18096646-18096767)
chr8 (332-389)||(12712113-12712170)
chr8 (340-389)||(6117562-6117611)
chr8 (35-100)||(12647160-12647225)
chr8 (41-100)||(12711786-12711845)
chr8 (35-104)||(12652270-12652339)
chr8 (332-393)||(18139784-18139845)
chr8 (32-92)||(12709892-12709952)
chr8 (334-390)||(12724620-12724676)
chr8 (35-98)||(6117901-6117964)
chr8 (340-387)||(12705461-12705508)
chr8 (38-108)||(18082280-18082350)
chr8 (41-98)||(12705780-12705837)
chr8 (41-90)||(22945459-22945508)
[»] chr1 (6 HSPs)
chr1 (319-391)||(17747850-17747923)
chr1 (31-89)||(19219179-19219237)
chr1 (325-392)||(22535498-22535565)
chr1 (31-89)||(19225436-19225494)
chr1 (41-82)||(22535211-22535252)
chr1 (30-150)||(17748092-17748211)
[»] chr4 (2 HSPs)
chr4 (38-159)||(37875592-37875713)
chr4 (35-83)||(20426643-20426691)
[»] chr2 (2 HSPs)
chr2 (35-102)||(44912518-44912585)
chr2 (35-89)||(44937794-44937848)
[»] chr3 (1 HSPs)
chr3 (32-89)||(2703738-2703795)
[»] chr7 (1 HSPs)
chr7 (31-103)||(6432600-6432672)
[»] chr5 (1 HSPs)
chr5 (26-102)||(42840501-42840577)


Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 13024743 - 13025137
Alignment:
Q  12 cagagataagaggacaagttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgt 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  13024743 cagagataagaggacaagttaagggtccaacaacaaagaatttagtccacgattctttgacaccgagttcacccaaaacccaaatgtgaaaatcaggcgt 13024842  T
Q  112 ctggttgtaattagtgatgtaagaaagagatccatttaattccaccaatcccattttcatccgtttatattttatatctgagttagagggtaatggtgtt 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13024843 ctggttgtaattagtgatgtaagaaagagatccatctaattccaccaatcccattttcatctgtttatattttatatctgagttagagggtaatggtgtt 13024942  T
Q  212 gcaacgaatgtctctttgctaaagtcaaacgacaccataacaggtccttcaatcgacaaccaatggcaaaatccattcatgttcacgagagaatgtgggc 311  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13024943 gcaacgaatgtctctttggtaaagtcaaacaacaccataacaggtccttcaatcgacaaccaatggcaaaatccattcatgttcacgagagaacgtgggc 13025042  T
Q  312 aagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13025043 aagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagc 13025137  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 18096767 - 18096646
Alignment:
Q  38 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgatgtaagaaa 137  Q
    |||||||||||||  || ||||| |||||||||||||| | |||||||||||||||||| ||||||||||| |||  || |||||||  ||||  |||||    
T  18096767 ccgacaacaaagagcttggtccatgattccttgacacccacttcacccaaaacccaaatatgaaaatcaggcgtcctgtcgtaattatagatgacagaaa 18096668  T
Q  138 gagatccatttaattccaccaa 159  Q
    ||||  ||||||| ||||||||    
T  18096667 gagactcatttaactccaccaa 18096646  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 12712113 - 12712170
Alignment:
Q  332 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 389  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  12712113 ccatcgattttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 12712170  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 6117611 - 6117562
Alignment:
Q  340 tttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 389  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  6117611 tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 6117562  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 12647225 - 12647160
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtga 100  Q
    ||||| |||||||| | |||||||||||||||||| |||||  |||||||||||||||| ||||||    
T  12647225 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 12647160  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 12711786 - 12711845
Alignment:
Q  41 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtga 100  Q
    |||||||||| |||| |||||||||| || ||||||||||||||||||| ||| ||||||    
T  12711786 acaacaaagagtttaatccacgattctttaacaccgagttcacccaaaatccatatgtga 12711845  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 12652339 - 12652270
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaat 104  Q
    ||||| |||||||||| |||||||||||||||||  ||||| | ||||||||||| | | ||||||||||    
T  12652339 ggtccaacaacaaagagtttagtccacgattcctcaacaccaatttcacccaaaatcgatatgtgaaaat 12652270  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 18139784 - 18139845
Alignment:
Q  332 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaa 393  Q
    ||||| |||||||||||||||| ||||||||| ||||| |||||| | ||||| ||||||||    
T  18139784 ccatcaagtttcctccaagaatcacttttgagactatatatctcccaaaaaggttcatacaa 18139845  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 12709892 - 12709952
Alignment:
Q  32 aagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaaccc 92  Q
    |||||||| | ||| ||||||||||||||||||||||||||||  | || |||||||||||    
T  12709892 aagggtccaagaacgaagaatttagtccacgattccttgacactaatttaacccaaaaccc 12709952  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 12724676 - 12724620
Alignment:
Q  334 atcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcata 390  Q
    |||||||||||||||||| |||||| |||||||||| |||||| |||| || |||||    
T  12724676 atcgagtttcctccaagagttacttctgaggctatatatctccaagaatggttcata 12724620  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 6117964 - 6117901
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgt 98  Q
    ||||| |||||||||| |||| |||||||||| || ||||| ||||||||||||| ||| ||||    
T  6117964 ggtccaacaacaaagagtttaatccacgattctttaacaccaagttcacccaaaatccatatgt 6117901  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 12705508 - 12705461
Alignment:
Q  340 tttcctccaagaattacttttgaggctataaatctccgagaaagggtc 387  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12705508 tttcctccaagagttacttttgaggctatataactcccagaaagggtc 12705461  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 18082350 - 18082280
Alignment:
Q  38 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcagg 108  Q
    ||||||| |||||  || ||||| |||||||| ||||| | |||| ||||||||||||| |||||||||||    
T  18082350 ccgacaataaagagcttggtccatgattcctttacacccacttcatccaaaacccaaatatgaaaatcagg 18082280  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 12705837 - 12705780
Alignment:
Q  41 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgt 98  Q
    |||||||||| |||| |||||||||| || ||||||| ||||||||||| ||| ||||    
T  12705837 acaacaaagagtttaatccacgattctttaacaccgacttcacccaaaatccatatgt 12705780  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 22945508 - 22945459
Alignment:
Q  41 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaac 90  Q
    |||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  22945508 acaacaaacaatttagtccacgattccatcaaaccgagttcacctaaaac 22945459  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 17747923 - 17747850
Alignment:
Q  319 aggcatatcaaccccatcga-gtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatac 391  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||  ||||||||||||||    
T  17747923 aggcatatcaaccccattgaagtttcctccaagagttacttatgaggctatatatctcacagaaagggtcatac 17747850  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 19219179 - 19219237
Alignment:
Q  31 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 89  Q
    ||||||||| ||| | ||||  |||||||| ||||||||||||||||||||||||||||    
T  19219179 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaa 19219237  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 22535498 - 22535565
Alignment:
Q  325 atcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcataca 392  Q
    |||||| ||||| |||||||||||||| |||||| | ||||| || |||||| | |||||||||||||    
T  22535498 atcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaaaaagggtcataca 22535565  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 19225436 - 19225494
Alignment:
Q  31 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 89  Q
    ||||||||| ||| | ||||  |||||||| ||||||||||||||||| ||||||||||    
T  19225436 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaa 19225494  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 22535211 - 22535252
Alignment:
Q  41 acaacaaagaatttagtccacgattccttgacaccgagttca 82  Q
    |||||||||| ||||| ||||||||||| |||||||||||||    
T  22535211 acaacaaagagtttagcccacgattcctcgacaccgagttca 22535252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 17748211 - 17748092
Alignment:
Q  30 ttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgat 129  Q
    |||| ||||| ||||| || | ||||||||| ||||||||||||| ||||| |||| ||| | | |||||||||| || ||||| ||  ||||||| |||    
T  17748211 ttaatggtccaacaacgaaaactttagtccatgattccttgacacagagttgaccc-aaatctatatgtgaaaataagttgtcttgtaataattagagat 17748113  T
Q  130 gtaagaaagagatccatttaa 150  Q
    |  ||||| ||| ||||||||    
T  17748112 gagagaaacagacccatttaa 17748092  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 37875713 - 37875592
Alignment:
Q  38 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgatgtaagaaa 137  Q
    |||||||||||||  || ||||| |||||||| | ||| | ||||||||||||||| || ||||||||||| |||  || |||||||  ||||  |||||    
T  37875713 ccgacaacaaagagattggtccatgattccttaatacccacttcacccaaaacccagatatgaaaatcaggcgtcatgtcgtaattatagatgacagaaa 37875614  T
Q  138 gagatccatttaattccaccaa 159  Q
    ||||  ||||||| ||||||||    
T  37875613 gagactcatttaactccaccaa 37875592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 20426691 - 20426643
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcac 83  Q
    ||||| |||||||||| ||| |||||||||||||| || ||||||||||    
T  20426691 ggtccaacaacaaagagtttggtccacgattccttcacgccgagttcac 20426643  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 44912518 - 44912585
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaa 102  Q
    ||||| |||||||||| |||||| ||||||||||| ||||| ||||||||||||| | | ||||||||    
T  44912518 ggtccaacaacaaagagtttagttcacgattccttcacaccaagttcacccaaaatcgatatgtgaaa 44912585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 44937794 - 44937848
Alignment:
Q  35 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 89  Q
    ||||| |||||||||| ||||||||| ||||| || || ||||||||||||||||    
T  44937794 ggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaa 44937848  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 2703795 - 2703738
Alignment:
Q  32 aagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 89  Q
    |||||| | ||| |||||| |||| |||| |||||||||||||| |||||||||||||    
T  2703795 aagggttcaacatcaaagagtttaatccatgattccttgacaccaagttcacccaaaa 2703738  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 6432672 - 6432600
Alignment:
Q  31 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaa 103  Q
    ||||||||||||||  |||| ||| ||||| ||||| |||||||| ||||||| ||||||  | |||||||||    
T  6432672 taagggtccgacaatgaagagtttggtccatgattctttgacaccaagttcacacaaaacatatatgtgaaaa 6432600  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 42840501 - 42840577
Alignment:
Q  26 caagttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaa 102  Q
    |||| |||||| || |||| ||||| ||||||||| ||||| || ||||| |||||||||||||   ||||||||||    
T  42840501 caaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaa 42840577  T

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