View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10325_high_10 (Length: 299)
Name: NF10325_high_10
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 17007535 - 17007264
Alignment:
| Q |
18 |
aataacagtgtcaatgttgccgactgtgataaaggaaaagaacattatgtcaaaggtttagatgttggaggagtttcgttgaatcaaacgaaggaatcgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17007535 |
aataacagtgtcaatgttgccgactgtgataaaggaaaagaacattatgtcaaaggtttagatgttggaggagtttcgttgaatcaaacgaaggaatcgg |
17007436 |
T |
|
| Q |
118 |
ataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaa---gaaggaatctattgataacaatgattt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
17007435 |
ataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaagaaggaatctattgataacaatggttt |
17007336 |
T |
|
| Q |
215 |
gaatcaaagcttcaaaagcttactttttatgccgaaggagttgggtttacttgaactgcttggtaaatgcct |
286 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17007335 |
gaatcaaagcttcaaaagctcactttttatgccgaaggagttgggtttacttgaactgcttggtaaatgcct |
17007264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 111 - 276
Target Start/End: Complemental strand, 16976592 - 16976430
Alignment:
| Q |
111 |
gaatcggataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaaggaatctattgataacaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
16976592 |
gaatcggataaagagaaaatgatggagaacaacgaaagggactatgaaggtatagctaatatccctattg---agaagaaggaatctattgataaccatg |
16976496 |
T |
|
| Q |
211 |
atttgaatcaaagcttcaaaagcttactttttatgccgaaggagttgggtttacttgaactgcttg |
276 |
Q |
| |
|
||||||||||||| |||||| | || ||||||||| ||||||||| ||| ||| ||||| |||| |
|
|
| T |
16976495 |
gtttgaatcaaagcgtcaaaaacccacattttatgccaaaggagttgcgttcactcgaactccttg |
16976430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 16967799 - 16967624
Alignment:
| Q |
107 |
gaaggaatcggataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattg------tgaagaagaaggaatctatt |
200 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16967799 |
gaaggaatcaaataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagaagaagaaggaatctatt |
16967700 |
T |
|
| Q |
201 |
gataacaatgatttgaatcaaagcttcaaaagcttactttttatgccgaaggagttgggtttacttgaactgcttg |
276 |
Q |
| |
|
||||||| | ||||||||||||| |||||||| || ||||| ||| ||||||||| ||| ||| ||||| |||| |
|
|
| T |
16967699 |
gataacagttgtttgaatcaaagcgtcaaaagcccacattttacgccaaaggagttgcgttcactcgaactccttg |
16967624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 10602281 - 10602395
Alignment:
| Q |
119 |
taaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaaggaatctattgataacaatgatttgaat |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
10602281 |
taaacagaaaatggtggagaacaaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgata |
10602380 |
T |
|
| Q |
219 |
caaagcttcaaaagc |
233 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
10602381 |
caaagcgtcaaaagc |
10602395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 16976674 - 16976594
Alignment:
| Q |
107 |
gaaggaatcggataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaa |
187 |
Q |
| |
|
||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
16976674 |
gaaggaatcagagaaacagaaaataatggagaacaaaggaagggactataaaggtataactaacatccctattgagaagaa |
16976594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 284
Target Start/End: Complemental strand, 16991934 - 16991757
Alignment:
| Q |
107 |
gaaggaatcggataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaaggaatctattgataac |
206 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||| ||||||| |||||||||| |||| ||||| || || ||||||||||||| | ||||||| |
|
|
| T |
16991934 |
gaaggaatcagataaacagaaaacaatggagaacaaaagaagggattataaaggtagagctgacatctgtaatggtgagaagaaggaatcaactgataac |
16991835 |
T |
|
| Q |
207 |
aatgatttgaatcaaagcttcaaaagcttactttttatgccgaaggagttgggtttacttgaactgcttggtaaatgc |
284 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||||| || |||||||| ||| ||| ||||| |||| ||||||| |
|
|
| T |
16991834 |
aatggattgaatcaaagcgtcaaaagcacacattttacgcgcaaggagttacgttcactcgaactccttgttaaatgc |
16991757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 16967871 - 16967827
Alignment:
| Q |
50 |
aggaaaagaacattatgtcaaaggtttagatgttggaggagtttc |
94 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||| |||||||| |
|
|
| T |
16967871 |
aggaaaaaaaaattatgtcaaaggtttaggtgttggtggagtttc |
16967827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 16992026 - 16991962
Alignment:
| Q |
30 |
aatgttgccgactgtgataaaggaaaagaacattatgtcaaaggtttagatgttggaggagtttc |
94 |
Q |
| |
|
||||||| ||||| |||| ||||||||| || | ||| ||||| |||||||||||||||||||| |
|
|
| T |
16992026 |
aatgttggcgactctgatggaggaaaagatcaatttgttaaaggcttagatgttggaggagtttc |
16991962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 35263448 - 35263621
Alignment:
| Q |
111 |
gaatcggataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaaggaatctattgataacaatg |
210 |
Q |
| |
|
||||| |||||| |||||| |||||||||||| ||||||| |||||||||| |||||||||| || || ||||||||||||||||||||| ||||| |
|
|
| T |
35263448 |
gaatcagataaacagaaaacaatggagaacaaaagaagggattataaaggtagagctaacatctgtaatggtgagaagaaggaatctattgataccaatg |
35263547 |
T |
|
| Q |
211 |
atttgaatcaaagcttcaaaagcttactttttatgccgaaggagttgggtttacttgaactgcttggtaaatgc |
284 |
Q |
| |
|
||||||||||||| |||||||| || ||||| || |||||||||| ||| ||| ||||| |||| ||||||| |
|
|
| T |
35263548 |
gtttgaatcaaagcgtcaaaagcacacattttacgcggaaggagttgcgttcactcgaactccttgttaaatgc |
35263621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University