View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_high_13 (Length: 283)
Name: NF10325_high_13
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 29519789 - 29519537
Alignment:
| Q |
15 |
cacatcaaggaaaaaataatttataataacttagagctttcaatcaagagagatttatttgattgttctcttcagaatcaaaatggtgggtattttctcg |
114 |
Q |
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| T |
29519789 |
cacatcaaggaaaaaataat----aatagcttagagctttcaatcaagagagatttatttgattattctcttcagaatcaaaatggtgggtattttctcg |
29519694 |
T |
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| Q |
115 |
ttggttacgggcatggctggaccaagtggatttggatcctctacaacagctgaacaagttactcaaggaattgatgcaagcaacctcactgcaattatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519693 |
ttggttacgggcatggctggaccaagtggatttggatcctctacaacagctgaacaagttactcaaggaattgatgcaagcaacctcactgcaattatca |
29519594 |
T |
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| Q |
215 |
cagg---nnnnnnnaattcaccttgtttgtttgaacatgaaaatgatgtgatatatttcat |
272 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29519593 |
caggttttttttttaattcacc----ttgtttgaacatgaaaatgatgtgatatatttcat |
29519537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 40098961 - 40099052
Alignment:
| Q |
127 |
atggctggaccaagtggatttggatcctctacaacagctgaacaagttactcaaggaattgatgcaagcaacctcactgcaattatcacagg |
218 |
Q |
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| T |
40098961 |
atggctggtccaagtgggtttggatcagcttcaactgcagagcaggttactcaaggaattgatgctagcaaccttaccgcaattatcacagg |
40099052 |
T |
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