View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_high_19 (Length: 257)
Name: NF10325_high_19
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 36205096 - 36204891
Alignment:
| Q |
28 |
tttggaatcacaatgaatttgaaaaaatcacggtgacacacact--gaaactattgtataaaattgcacgaaactaacaactgtcaaataactctcatat |
125 |
Q |
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| T |
36205096 |
tttggaatcacaatgagtttgaaaaaatcacgatgacacacactatgaaactattgtataaaattgcacgaaactatcaactgtcaaaagactctcatat |
36204997 |
T |
|
| Q |
126 |
catggaggtactgtcaagctattgtactga--------aattagatcactataattcatgaaatcttttagttagatagattttgcagatacatcacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |
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| T |
36204996 |
catggaggtactgtcaagctattgtactgaataccattaattagatcactataattcatgaaatcttttagttacaaagattttgcagatacattacaaa |
36204897 |
T |
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| Q |
218 |
atatgc |
223 |
Q |
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|||||| |
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| T |
36204896 |
atatgc |
36204891 |
T |
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