View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_high_4 (Length: 465)
Name: NF10325_high_4
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 39600413 - 39600849
Alignment:
| Q |
19 |
taagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39600413 |
taagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatct |
39600512 |
T |
|
| Q |
119 |
gacccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccacacttttcgcactttggaagcatagg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39600513 |
gacccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcgttttcttgtccacacttttcgcactttggaagcatagg |
39600612 |
T |
|
| Q |
219 |
attcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaacttcattaaacttttcgttcaaatcaaattcaaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39600613 |
attcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaacttcattaaacttttcgttcaaatcaaattcaaga |
39600712 |
T |
|
| Q |
319 |
acgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcctttagatagcaagtggtgaatggtataaactttggcacgtttac |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39600713 |
acgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcctttagatagcaagtggtgaatggtataaactttggcacgtttac |
39600812 |
T |
|
| Q |
419 |
aagtagcccatggaaaaggtgggtttattgtctctgc |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39600813 |
aagtagcccatggaaaaggtgggtttattgtctctgc |
39600849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 39781562 - 39781205
Alignment:
| Q |
17 |
cataagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcat |
116 |
Q |
| |
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||||||| |||||||| ||||||| |||||||| ||||| || ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39781562 |
cataagtcagataaattaaacgatctttggcactgatcctaagattattggtatgcttgcagaaatacttcaaatgttgaagcttgcaacacccaatcat |
39781463 |
T |
|
| Q |
117 |
ctgacccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccacacttttcgcactttggaagcata |
216 |
Q |
| |
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||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| | |
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| T |
39781462 |
ctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggattcatagcattttcttgtccacacttgtcgcatttgggaagcaca |
39781363 |
T |
|
| Q |
217 |
ggattcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaacttcattaaacttttcgttcaaatcaaattcaa |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| || |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
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|
| T |
39781362 |
ggattcatccaagccttaggtgcacgatcatgcatgttgtacttgttcttttcaatgaactcaacaacttcatcaaacttttccttcaaatcaaattgga |
39781263 |
T |
|
| Q |
317 |
gaacgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcc |
374 |
Q |
| |
|
|||| | ||| || | |||| | ||||| |||| |||||| |||||||||||||| |
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|
| T |
39781262 |
gaacacgttggaagccacattgtttgcattgaaccgttccaccgattgtgttgaagcc |
39781205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 39780228 - 39780152
Alignment:
| Q |
378 |
agatagcaagtggtgaatggtataaactttggcacgtttacaagtagcccatggaaaaggtgggtttattgtctctg |
454 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||| |
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|
| T |
39780228 |
agatagcaattggtgaatggtataaactttggcacgtttgcaagtggcccatgggaatggtgggtttattgtctctg |
39780152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 40284738 - 40284938
Alignment:
| Q |
27 |
ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac |
126 |
Q |
| |
|
||||||||| | |||||||||||| || || || |||| ||||||||||||||| ||||| || | |||||||||||||| ||||| ||||| ||| |
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|
| T |
40284738 |
ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaac |
40284837 |
T |
|
| Q |
127 |
aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccacacttttcgcactttggaagcataggattcatcc |
226 |
Q |
| |
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| ||| |||||||||||||| ||||||||||||| || | ||||| ||| || || |||| |||||| | ||||| || || | || ||||||||||| |
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| T |
40284838 |
agcaagaacaaccaattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatcc |
40284937 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
|
| |
|
|
| T |
40284938 |
a |
40284938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 40279777 - 40279944
Alignment:
| Q |
27 |
ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac |
126 |
Q |
| |
|
||||||||| | |||||||||||| || || || |||| ||||||||||||||| ||||| || | ||| |||||||| || ||||| ||||||||| |
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|
| T |
40279777 |
ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaac |
40279876 |
T |
|
| Q |
127 |
aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccaca |
194 |
Q |
| |
|
| ||| ||||||||||| || ||||||||||||| || | ||||| ||| || || ||||||||||| |
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|
| T |
40279877 |
agcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccaca |
40279944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 40458573 - 40458406
Alignment:
| Q |
27 |
ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac |
126 |
Q |
| |
|
||||||||| | |||||||||||| || || || |||| ||||||||||||||| ||||| || | ||| |||||||| || ||||| ||||||||| |
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|
| T |
40458573 |
ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaac |
40458474 |
T |
|
| Q |
127 |
aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccaca |
194 |
Q |
| |
|
| ||| ||||||||||| || ||||||||||||| || | ||||| ||| || || ||||||||||| |
|
|
| T |
40458473 |
agcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccaca |
40458406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 39611119 - 39611279
Alignment:
| Q |
23 |
taagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacc |
122 |
Q |
| |
|
|||||||| | || |||| || |||||||||||||||| ||| || ||||||| |||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
39611119 |
taagataatttaaccgatcttcggcaccagtcctatgattatcaggatacttgcagacatatttataatgtttgagcttgcaacacccaatcatctgacc |
39611218 |
T |
|
| Q |
123 |
caac--aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcatttt |
184 |
Q |
| |
|
||| | ||| |||||||| ||||| |||||||| ||| ||||| |||||||||||||||| |
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|
| T |
39611219 |
taactgagcaagaacaaccagttgatcgttctctttttt---attatcggattcatagcatttt |
39611279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 28649868 - 28649938
Alignment:
| Q |
73 |
ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaatt |
143 |
Q |
| |
|
||||| ||||| ||||| |||| ||| |||||||| |||| ||| || ||||||||||||||||||||||| |
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|
| T |
28649868 |
ttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaatt |
28649938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 10124267 - 10124340
Alignment:
| Q |
73 |
ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat |
146 |
Q |
| |
|
||||| ||||||||||| |||| |||||| ||||| |||| ||| || || | ||||| ||||||||||||||| |
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|
| T |
10124267 |
ttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgat |
10124340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 25040653 - 25040726
Alignment:
| Q |
73 |
ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat |
146 |
Q |
| |
|
||||| ||||| ||||| |||| |||||||||||| ||||| || || |||| ||||| ||||||||||||||| |
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|
| T |
25040653 |
ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacagaaacaaccaattgat |
25040726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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