View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_1 (Length: 709)
Name: NF10325_low_1
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 52140144 - 52140717
Alignment:
| Q |
1 |
aaataaacctggccaggaccatgatatgtaacttctccgccacgttcagtacgatgaatatgaaagggtggattttgaatgtcgaaattgaggttgtcgt |
100 |
Q |
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| T |
52140144 |
aaataaacctggccaggaccatgatatgtaacttctccgccacgttcagtacgatgaatatgaaagggtggattttgaatgtcgaaattgaggttgtcgt |
52140243 |
T |
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| Q |
101 |
tggaactagcagtacccaatgtaaaaacagaagggtgttgcaaaacaataagagtgtcgttgcaatctccttcattttgaatctgtgatttcttttgttt |
200 |
Q |
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| T |
52140244 |
tggaactagcagtacccaatgtaaaaacagaagggtgttgcaaaacaataagagtgtcgttgcaatctccttcattttgaatctgtgatttcttttgttt |
52140343 |
T |
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| Q |
201 |
gacaatgtctttttgtaaagaccatgccacttcgtaagggataaattgttgatggaaatctatgagctcacagcttcgtaaacattgcaccgttttggtt |
300 |
Q |
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| T |
52140344 |
gacaatgtctttttgtaaagaccatgccacttcgtaagggataaattgttgatggaaatctatgagctcacagcttcgtaaacattgcaccgttttggtt |
52140443 |
T |
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| Q |
301 |
cttcttctatggatattgattatgagagaggatgattttgaatgtgaattggagtggtggcggagtgatcgaggttgaggttgggtgaaaatgaaacaac |
400 |
Q |
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| T |
52140444 |
cttcttctatggatattgaatatgagagaggatgattttgaatgtgaattggagtggtggcggagtgatcgaggtcgaggttgggtgaaaatgaaacaac |
52140543 |
T |
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| Q |
401 |
aatctcccaataaaatcatgcttatgtttcaactgtgnnnnnnnnnnnnnnnnctccttcaataaattgtatttgccataaacttttgctgagacagaat |
500 |
Q |
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| T |
52140544 |
aatttcccaataaaatcatgcttatgtttcaactgtgcttttctttttattttctccttcaataaattgtatttgccataaacttttgctgagacagaat |
52140643 |
T |
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| Q |
501 |
tattggagatggaaacataatgatttcaaaattgaaccggtcatcgataaaataatgcttatgttagtcactga |
574 |
Q |
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| T |
52140644 |
tattggagatgaaaacataatgatttcaaaattgaaccggtcatcgataaaataatgcttatgttagtcactga |
52140717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 607 - 691
Target Start/End: Original strand, 52140751 - 52140835
Alignment:
| Q |
607 |
aaagatggtagtgaattagtaactgaattaattgcatgaaataactagattaaatcaaataattcggtcgttcgtataacttcat |
691 |
Q |
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| T |
52140751 |
aaagatggtagtgaattagtaactgaattaattgcatgaaataactggattaaatcaaataattcggtcgttcgtataacttcat |
52140835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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