View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_10 (Length: 313)
Name: NF10325_low_10
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 36872539 - 36872265
Alignment:
| Q |
22 |
agagcactataggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgtagtccaaactgaggtgaaagatatggattgggaa |
121 |
Q |
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| T |
36872539 |
agagcactataggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaa |
36872440 |
T |
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| Q |
122 |
agcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaacattaatatgacat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
36872439 |
agcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaatattaataggacat |
36872340 |
T |
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| Q |
222 |
atataacacattgcataacataatattattttgtcacgtttctatgattttgtagaagcatatatatcttctttt |
296 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36872339 |
atataacacattgcataacataatatttttttgtcacgtttctatgattttgtagaagcatatatatcttctttt |
36872265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 37628963 - 37629066
Alignment:
| Q |
92 |
caaactgaggtgaaagatatggattgggaaagcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaataca |
191 |
Q |
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||||||||||| ||||| ||||| ||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
37628963 |
caaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacatttcagagatccctgatctcagtgatgaataca |
37629062 |
T |
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| Q |
192 |
ggtt |
195 |
Q |
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|||| |
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| T |
37629063 |
ggtt |
37629066 |
T |
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