View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10325_low_16 (Length: 275)

Name: NF10325_low_16
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10325_low_16
NF10325_low_16
[»] chr1 (2 HSPs)
chr1 (139-255)||(40560464-40560580)
chr1 (4-114)||(40560766-40560876)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 40560580 - 40560464
Alignment:
Q  139 aaaatacattggtgacctttatcgacctttattgggtaatgacatctcatattggctattgatattgagatttcttttacttctgcatactctcatttcc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  40560580 aaaatacattggtgacctttatcgacctttattgggtaatgacatctcatgttggctattgggattgagatttcttttacttctgcatactctcatttcc 40560481  T
Q  239 aactgacatctcttctt 255  Q
    |||||||||||||||||    
T  40560480 aactgacatctcttctt 40560464  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 40560876 - 40560766
Alignment:
Q  4 caataaaacatgtttgcacccttgcttctatcacaataaccgcaaatggagtttggaatgtttgtatgcattaaaacattacaaattacagtaaaaagtt 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  40560876 caataaaacatatttgcacccttgcttctatcacaataaccgcaaatggagtttggaatttttgtttgcattaaaacattacaaattacaataaaaagtt 40560777  T
Q  104 tacaaccttac 114  Q
    |||||||||||    
T  40560776 tacaaccttac 40560766  T

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