View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_18 (Length: 270)
Name: NF10325_low_18
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 7371286 - 7371462
Alignment:
| Q |
2 |
tgtgaaagcgttgcaaccataaattccgctatgatgtttgggctagaaataattgatggctaatggaatttacaggttaaagatgtgtcgactcaatcga |
101 |
Q |
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| T |
7371286 |
tgtgaaagcgttgcaaccataaattccgctatgatgtttgggctagaaataattgatggctaatggaatttacaggttaaagatgtgtcgactcaatcga |
7371385 |
T |
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| Q |
102 |
gattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg |
178 |
Q |
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| T |
7371386 |
gattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg |
7371462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 7371566 - 7371634
Alignment:
| Q |
186 |
aaggaagaaggaggtcaagagtacacacacatatacacaagctctagttcttagttacaagatataatg |
254 |
Q |
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| T |
7371566 |
aaggaagaaggaggtcaagagtacacacacatatacacaagctctagttcttagttacaagatataatg |
7371634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 2615345 - 2615262
Alignment:
| Q |
95 |
caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg |
178 |
Q |
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| T |
2615345 |
caatcgggatttcacagggtgttgattagtacacgggcattgattgatattgatgtaaggtgtgatgtgcggttatgtcggtgg |
2615262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 31795718 - 31795635
Alignment:
| Q |
95 |
caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg |
178 |
Q |
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| T |
31795718 |
caatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagattatatcggtgg |
31795635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 16387893 - 16387976
Alignment:
| Q |
95 |
caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg |
178 |
Q |
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| T |
16387893 |
caatcgagattacacaatgtgtagattaatagattaacattgattgacattgatgcaaagtgtgctgtgagattttgttggtgg |
16387976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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