View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_23 (Length: 257)
Name: NF10325_low_23
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24615612 - 24615850
Alignment:
| Q |
1 |
aaccctgaaatatagagttggcacttataaggccagtgactaccacatgctgcataaccattcaccagaagagtagaataaagtcgaactatttttatat |
100 |
Q |
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| T |
24615612 |
aaccctgaaatatagagttggcacttataaggccagtgactaccacatgctgcataaccattcaccagaagagtagaataaagtcgaactatttttatat |
24615711 |
T |
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| Q |
101 |
atagttataataagttgtgaatagaaataatgatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttc |
200 |
Q |
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| T |
24615712 |
atagttataataagttgtgaatagaaataatgatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttc |
24615811 |
T |
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| Q |
201 |
aaaatcactttgttcaacaaaatcctcactatcatctct |
239 |
Q |
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| T |
24615812 |
aaaatcactttgttcaacaaaatcctcactatcatctct |
24615850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 24115032 - 24114954
Alignment:
| Q |
132 |
gatatcctctctttggctgtgaaatttatctatcacatattttgaatccaacataaaatccaccagttcaaaatcactt |
210 |
Q |
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| T |
24115032 |
gatatcctccttttgactgagaaatttatctaccacatattttgaatccaactaaaaatcgaccagcttaaaatcactt |
24114954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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