View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_24 (Length: 246)
Name: NF10325_low_24
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 40904525 - 40904757
Alignment:
| Q |
3 |
tgttactctcttatcttgtgtgtgtgtttcggttactattggaaatggaaagataactcgtgctcttctctttaaaccacaatttaggctgctgaagggg |
102 |
Q |
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| T |
40904525 |
tgttactctcatatcttgtgtgtgtgtttcggttactattggaaatggaaagataacccgtgctcttctctttaaaccacaatttaggctgctgaagggg |
40904624 |
T |
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| Q |
103 |
caaggatttctggtgcatcaagaatcattggggttgatttagtttccagccgatttgaattaggtacaatgcttttcttattccatcaaatgctttaata |
202 |
Q |
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| T |
40904625 |
caaggatttctggtgcatcaagaatcattggggttgatttagtttccagccgatttgaattaggtacaatgcttttcttattccatcaaatgctttaaga |
40904724 |
T |
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| Q |
203 |
ttgaagttaacacaaattcaatgactgtttctt |
235 |
Q |
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| T |
40904725 |
ttgaagttaacacaaattcaatgactgtttctt |
40904757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 40900062 - 40900222
Alignment:
| Q |
74 |
ttaaaccacaatttaggctgctgaaggggcaaggatttctggtgcatcaagaatcattggggttgatttagtttccagccgatttgaattaggtacaatg |
173 |
Q |
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| T |
40900062 |
ttaaaccaaaatttaggctgctgaaggagccaggatatctggtgcatcaagaatcattggagttgatttagtttccagccgatttgaattaggtacagtg |
40900161 |
T |
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| Q |
174 |
cttttcttattccatcaaatgctttaatattgaagttaacacaaattcaatgactgtttctt |
235 |
Q |
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| T |
40900162 |
c-tttcttattccatcaaatgcttgtagattctggttaacatgaattcaatgactatttctt |
40900222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 40881400 - 40881511
Alignment:
| Q |
88 |
aggctgctgaaggggcaaggatttctggtgcatcaagaatcattggggttgatttagtttccagccgatttgaattaggtacaatgcttttcttattcca |
187 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||| ||||| |||||||||||| |
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| T |
40881400 |
aggctgctgaaggagcaaggatatctggtgcatcaagaatcattggagtcgatttagtttccagccgtttcgaattaggtaaaatgc-tttcttattcca |
40881498 |
T |
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| Q |
188 |
tcaaatgctttaa |
200 |
Q |
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| T |
40881499 |
ccaaatgctttaa |
40881511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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