View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_26 (Length: 241)
Name: NF10325_low_26
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_26 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 27513833 - 27514068
Alignment:
| Q |
4 |
aatcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacg |
103 |
Q |
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| T |
27513833 |
aatcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatg |
27513930 |
T |
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| Q |
104 |
tttctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccg |
203 |
Q |
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| T |
27513931 |
tttctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcg |
27514030 |
T |
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| Q |
204 |
tctctgttctggttttttctgcggttcctcttcccacc |
241 |
Q |
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| T |
27514031 |
tctcctttctggttttttctgcggttcctcttcccacc |
27514068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
| Q |
30 |
gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga |
125 |
Q |
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| T |
8675040 |
gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga |
8674941 |
T |
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| Q |
126 |
gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac |
176 |
Q |
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| T |
8674940 |
gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac |
8674890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 39209911 - 39209798
Alignment:
| Q |
128 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcgg |
227 |
Q |
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| T |
39209911 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg |
39209812 |
T |
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| Q |
228 |
ttcctcttcccacc |
241 |
Q |
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| T |
39209811 |
ttcctcttcccacc |
39209798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39210006 - 39209906
Alignment:
| Q |
1 |
aaaaatcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagc |
100 |
Q |
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| T |
39210006 |
aaaaatcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagc |
39209907 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
39209906 |
a |
39209906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 24037014 - 24037194
Alignment:
| Q |
1 |
aaaaatcaaaacaacaacagccatcc----agtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgact |
96 |
Q |
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||||||||||||||||||||| || | || ||||||||| ||||||||||||||| ||||||||| |||| || | || |||||||||||||||||| |
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| T |
24037014 |
aaaaatcaaaacaacaacagcgattcaatgagagagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgact |
24037113 |
T |
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| Q |
97 |
tagcacgtttctaaaacttcttttga----agagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag |
173 |
Q |
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| T |
24037114 |
tagcgtgtttctcaagcttcttctgacgcttgagtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag |
24037194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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